| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,298,723 – 20,298,872 |
| Length | 149 |
| Max. P | 0.810456 |
| Location | 20,298,723 – 20,298,839 |
|---|---|
| Length | 116 |
| Sequences | 13 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.38 |
| Shannon entropy | 0.44965 |
| G+C content | 0.49766 |
| Mean single sequence MFE | -37.22 |
| Consensus MFE | -20.30 |
| Energy contribution | -19.89 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.78 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.795739 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20298723 116 + 24543557 CCUCCACAUCCUCGUUCAGCUUGUUCCGGUACUUAAUGCUGAUAAGUCCGUCCACCUGCAUCAGAAUGCAGGUGAUGCCGUUGGUGGCAUUGAAACGAUACAGCGAGGCGGUGGCA---- ...((((..(((((((....(((((.(((.(((((.......))))))))..(((((((((....)))))))))((((((....))))))...)))))...)))))))..))))..---- ( -43.40, z-score = -2.28, R) >droSim1.chr3L 19669648 116 + 22553184 CCUCCACAUCCUCGUUCAGCUUGUUCCGGUACUUAAUGCUGAUUAGUCCGUCCACCUGCAUCAGGAUGCAGGUGAUGCCGUUGGUGGCAUUGAAACGAUACAGCGAGGCGGUGGCA---- ...((((..(((((((((((..((......)).....)))))......(((.(((((((((....)))))))))((((((....))))))....))).....))))))..))))..---- ( -43.30, z-score = -1.83, R) >droSec1.super_11 207212 116 + 2888827 CCUCCACAUCCUCGUUCAGCUUGUUCCGGUACUUAAUGCUGAUUAGUCCGUCCACCUGCAUCAGGAUGCAGGUGAUGCCGUUGGUGGCAUUGAAACGAUACAGCGAGGCGGUGGCA---- ...((((..(((((((((((..((......)).....)))))......(((.(((((((((....)))))))))((((((....))))))....))).....))))))..))))..---- ( -43.30, z-score = -1.83, R) >droYak2.chr3L 3936804 116 - 24197627 CCUCCACAUCCUCGUUCAGCUUAUUCCGGUAUUUAAUGCUGAUAAGUCCGUCCACCUGCAUCAGGAUGCAAGUUAUGCCGUUUGUGGCAUUAAAACGAUACAGCGAGGCGGUGGCA---- ...((((..(((((((..((((((..((((((...)))))))))))).(((..((.(((((....))))).)).((((((....))))))....)))....)))))))..))))..---- ( -34.40, z-score = -1.32, R) >droEre2.scaffold_4784 20022774 116 + 25762168 CCUCCACAUCCUCGUUCAGCUUAUUCCGAUACUUAAUGCUGAUAAGUCCGUCCACCUGCAUCAGGAUGCAGGUGAUUCCGUUGGUGGCAUUAAAACGAUACAGCGAGGCGGUGGCA---- ...((((..(((((((..(((....((((((((((.......))))).....(((((((((....))))))))).....))))).)))(((.....)))..)))))))..))))..---- ( -37.30, z-score = -1.57, R) >droAna3.scaffold_13337 6417361 116 + 23293914 CCUCCACGUCCUCGUUCAGCUUGUUCCGAUACUUGAUGCUGAUCAGGCCGUCCACUUGCAUCAAGAUGCAGGUGAUGCCGUUGGUGGCAUUGAAGCGAUAAAGCGAGGCAGUAGCA---- .......(.(((((((..((((.....(((.((((((....))))))..)))(((((((((....)))))))))((((((....))))))..)))).....)))))))).......---- ( -38.20, z-score = -0.66, R) >dp4.chrXR_group6 2155536 116 + 13314419 CCUCCACAUCCUCGUUCAGCUUGUUGCGAUACUUGAUGCCAAUGAGACCGUCGACCUGCAUUAGGAUGCAGGUGAUUCCGUUGGUGGCAUUGAAGCGGUACAGCGAGGCAGUGGCA---- ...((((..(((((((..(((.(((.((((.((....(((((((.((..(((.((((((((....)))))))))))))))))))))).)))).))))))..)))))))..))))..---- ( -43.60, z-score = -1.75, R) >droPer1.super_9 448908 116 + 3637205 CCUCCACAUCCUCGUUCAGCUUGUUGCGAUACUUGAUGCCAAUGAGACCGUCGACCUGCAUUAGGAUGCAGGUGAUUCCGUUGGUGGCAUUGAAGCGGUACAGCGAAGCAGUGGCA---- ...((((..(.(((((..(((.(((.((((.((....(((((((.((..(((.((((((((....)))))))))))))))))))))).)))).))))))..))))).)..))))..---- ( -37.10, z-score = -0.24, R) >droWil1.scaffold_180698 8377522 116 - 11422946 CUUCAACAUCCUCACCCAAUUUAUUGCGAUAUUUAAUGCCAAUUAAACCGUCAACUUGCAUUAAAAUGCAGGUUAUUCCAUUUGUGGCAUUAAAACGAUAAAUCGAAGUGGUCGCU---- .........................(((((.((((((((((...........(((((((((....)))))))))..........)))))))))).(((....))).....))))).---- ( -29.60, z-score = -3.86, R) >droMoj3.scaffold_6680 1135727 116 - 24764193 CCUCCACAUCCUCGUUCAACUUAUUCCGAUAUCGGAUACUUAUUAAACCAUCUACUUGCAUAAGAAUGCAGGUGAUGCCAUUAGUAGCAUUUAAGCGAUAAAUCGAAGUAGUGGCA---- ...((((.................((((....))))((((((((((..((((.((((((((....))))))))))))...))))).((......)).........)))))))))..---- ( -28.80, z-score = -2.56, R) >droGri2.scaffold_15110 444347 116 - 24565398 CCUCAACAUCCUCGUUGAGUUUGUUCCGAUACCGUAUGCUUAUCAAGCCGUCCACCUGCAUGAGUAUGCAUGUGAUGUCAUUGGUGGCAUUUAGACGAUAAAUCGAUGUGGUCGCA---- .((((((......)))))).......((((..((((((((.(((((..((((.((.(((((....))))).))))))...)))))))))).....(((....))))))..))))..---- ( -30.20, z-score = -0.28, R) >droVir3.scaffold_13049 7163969 116 - 25233164 CCUCGACAUCCUCGUUCAGCUUGUUUCGAUACCGGAUACUUAUCAAUCCGUCCACCUGCAUCAGAAUGCAGGUGAUGCCGUUUGUGGCAUUGAAGCGAUAAAUCGAAGUAGUCGCA---- ...((((..(.(((......((((((((((..(((((........)))))..(((((((((....)))))))))..((((....)))))))))))))).....))).)..))))..---- ( -39.00, z-score = -3.30, R) >anoGam1.chr3L 25910987 117 - 41284009 ---CCUUAUCCUCAUUGUACUUAUCGCGGUACUGAAUGCUUAGCAGGGCAUCGGUUUGAAUCAGUAUGCACGUUGCUCCACUCGAUCCGUCCAGGCGGUACAGCGACAGGGAGGAUGGCA ---..((((((((.((((.......(((.((((((((((((....)))))).........))))))))).(((((..((.((.((....)).))..))..))))))))).)))))))).. ( -35.60, z-score = -0.10, R) >consensus CCUCCACAUCCUCGUUCAGCUUGUUCCGAUACUUAAUGCUGAUCAGUCCGUCCACCUGCAUCAGGAUGCAGGUGAUGCCGUUGGUGGCAUUGAAACGAUACAGCGAGGCGGUGGCA____ ...((((..........................((((((((...........(((((((((....)))))))))..........))))))))...((......)).....))))...... (-20.30 = -19.89 + -0.40)
| Location | 20,298,723 – 20,298,839 |
|---|---|
| Length | 116 |
| Sequences | 13 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.38 |
| Shannon entropy | 0.44965 |
| G+C content | 0.49766 |
| Mean single sequence MFE | -37.63 |
| Consensus MFE | -16.49 |
| Energy contribution | -14.92 |
| Covariance contribution | -1.57 |
| Combinations/Pair | 1.67 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.810456 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20298723 116 - 24543557 ----UGCCACCGCCUCGCUGUAUCGUUUCAAUGCCACCAACGGCAUCACCUGCAUUCUGAUGCAGGUGGACGGACUUAUCAGCAUUAAGUACCGGAACAAGCUGAACGAGGAUGUGGAGG ----..((((..(((((..((...(((((..((((......))))((((((((((....))))))))))..(((((((.......))))).)))))))..))....)))))..))))... ( -44.50, z-score = -3.22, R) >droSim1.chr3L 19669648 116 - 22553184 ----UGCCACCGCCUCGCUGUAUCGUUUCAAUGCCACCAACGGCAUCACCUGCAUCCUGAUGCAGGUGGACGGACUAAUCAGCAUUAAGUACCGGAACAAGCUGAACGAGGAUGUGGAGG ----..((((..(((((..((.(((((...(((((......)))))(((((((((....))))))))))))))))...(((((.................))))).)))))..))))... ( -44.43, z-score = -3.12, R) >droSec1.super_11 207212 116 - 2888827 ----UGCCACCGCCUCGCUGUAUCGUUUCAAUGCCACCAACGGCAUCACCUGCAUCCUGAUGCAGGUGGACGGACUAAUCAGCAUUAAGUACCGGAACAAGCUGAACGAGGAUGUGGAGG ----..((((..(((((..((.(((((...(((((......)))))(((((((((....))))))))))))))))...(((((.................))))).)))))..))))... ( -44.43, z-score = -3.12, R) >droYak2.chr3L 3936804 116 + 24197627 ----UGCCACCGCCUCGCUGUAUCGUUUUAAUGCCACAAACGGCAUAACUUGCAUCCUGAUGCAGGUGGACGGACUUAUCAGCAUUAAAUACCGGAAUAAGCUGAACGAGGAUGUGGAGG ----..((((..(((((..((.((((((..(((((......))))).((((((((....))))))))))))))))...(((((.................))))).)))))..))))... ( -39.63, z-score = -2.95, R) >droEre2.scaffold_4784 20022774 116 - 25762168 ----UGCCACCGCCUCGCUGUAUCGUUUUAAUGCCACCAACGGAAUCACCUGCAUCCUGAUGCAGGUGGACGGACUUAUCAGCAUUAAGUAUCGGAAUAAGCUGAACGAGGAUGUGGAGG ----..((((..((((((((..(((((......((......))...(((((((((....))))))))))))))......)))).....((.((((......))))))))))..))))... ( -40.30, z-score = -2.46, R) >droAna3.scaffold_13337 6417361 116 - 23293914 ----UGCUACUGCCUCGCUUUAUCGCUUCAAUGCCACCAACGGCAUCACCUGCAUCUUGAUGCAAGUGGACGGCCUGAUCAGCAUCAAGUAUCGGAACAAGCUGAACGAGGACGUGGAGG ----..((((..(((((.((((..((((..(((((......)))))...(((...((((((((....((....))......))))))))...)))...)))))))))))))..))))... ( -36.10, z-score = -0.94, R) >dp4.chrXR_group6 2155536 116 - 13314419 ----UGCCACUGCCUCGCUGUACCGCUUCAAUGCCACCAACGGAAUCACCUGCAUCCUAAUGCAGGUCGACGGUCUCAUUGGCAUCAAGUAUCGCAACAAGCUGAACGAGGAUGUGGAGG ----..((((..(((((.......((((..((((((.....(((.((((((((((....)))))))).))...)))...)))))).)))).((((.....)).)).)))))..))))... ( -37.60, z-score = -1.37, R) >droPer1.super_9 448908 116 - 3637205 ----UGCCACUGCUUCGCUGUACCGCUUCAAUGCCACCAACGGAAUCACCUGCAUCCUAAUGCAGGUCGACGGUCUCAUUGGCAUCAAGUAUCGCAACAAGCUGAACGAGGAUGUGGAGG ----..((((..(((((.......((((..((((((.....(((.((((((((((....)))))))).))...)))...)))))).)))).((((.....)).)).)))))..))))... ( -34.90, z-score = -0.68, R) >droWil1.scaffold_180698 8377522 116 + 11422946 ----AGCGACCACUUCGAUUUAUCGUUUUAAUGCCACAAAUGGAAUAACCUGCAUUUUAAUGCAAGUUGACGGUUUAAUUGGCAUUAAAUAUCGCAAUAAAUUGGGUGAGGAUGUUGAAG ----((((.((.(((((((((((((.((((((((((.((((.(..((((.(((((....))))).)))).).))))...))))))))))...))..)))))))))).).)).)))).... ( -31.20, z-score = -2.60, R) >droMoj3.scaffold_6680 1135727 116 + 24764193 ----UGCCACUACUUCGAUUUAUCGCUUAAAUGCUACUAAUGGCAUCACCUGCAUUCUUAUGCAAGUAGAUGGUUUAAUAAGUAUCCGAUAUCGGAAUAAGUUGAACGAGGAUGUGGAGG ----..((((..(((((.((((..(((((..((((......(.((((((.(((((....))))).)).)))).)......))))((((....)))).))))))))))))))..))))... ( -33.30, z-score = -2.64, R) >droGri2.scaffold_15110 444347 116 + 24565398 ----UGCGACCACAUCGAUUUAUCGUCUAAAUGCCACCAAUGACAUCACAUGCAUACUCAUGCAGGUGGACGGCUUGAUAAGCAUACGGUAUCGGAACAAACUCAACGAGGAUGUUGAGG ----..........((((..((((((.....(((((((..((....))..(((((....)))))))))).))(((.....)))..))))))))))......((((((......)))))). ( -28.90, z-score = -0.76, R) >droVir3.scaffold_13049 7163969 116 + 25233164 ----UGCGACUACUUCGAUUUAUCGCUUCAAUGCCACAAACGGCAUCACCUGCAUUCUGAUGCAGGUGGACGGAUUGAUAAGUAUCCGGUAUCGAAACAAGCUGAACGAGGAUGUCGAGG ----..((((..(((((((((((((.(((..((((......))))((((((((((....))))))))))..))).))))))))...((((..........))))..)))))..))))... ( -41.70, z-score = -3.74, R) >anoGam1.chr3L 25910987 117 + 41284009 UGCCAUCCUCCCUGUCGCUGUACCGCCUGGACGGAUCGAGUGGAGCAACGUGCAUACUGAUUCAAACCGAUGCCCUGCUAAGCAUUCAGUACCGCGAUAAGUACAAUGAGGAUAAGG--- ....(((((((.((((((.((((.....((..(((((.((((..((.....)).)))))))))...))(((((........)))))..)))).)))))).)......))))))....--- ( -32.20, z-score = -0.44, R) >consensus ____UGCCACCGCCUCGCUGUAUCGUUUCAAUGCCACCAACGGCAUCACCUGCAUCCUGAUGCAGGUGGACGGACUAAUCAGCAUUAAGUAUCGGAACAAGCUGAACGAGGAUGUGGAGG ......((((..(((((.......(((.....(((......((.....))(((((....))))).......)).).....))).....((......))........)))))..))))... (-16.49 = -14.92 + -1.57)
| Location | 20,298,775 – 20,298,872 |
|---|---|
| Length | 97 |
| Sequences | 13 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 73.96 |
| Shannon entropy | 0.53497 |
| G+C content | 0.49814 |
| Mean single sequence MFE | -31.29 |
| Consensus MFE | -14.74 |
| Energy contribution | -14.76 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.562539 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20298775 97 + 24543557 CACCUGCAUCAGAAUGCAGGUGAUGCCGUUGGUGGCAUUGAAACGAUACAGCGA----GGCGGUGGCAUCGUGGUUCAUGGAGGAGGCCUGCAAAAGAUAU------------- (((((((((....)))))))))((((((....))))))(((((((((.((.((.----..)).))..)))))..))))((.(((...))).))........------------- ( -32.00, z-score = -0.98, R) >droSim1.chr3L 19669700 97 + 22553184 CACCUGCAUCAGGAUGCAGGUGAUGCCGUUGGUGGCAUUGAAACGAUACAGCGA----GGCGGUGGCAUCGUGGUUCAUGGAGGAGGCCUGCAAAAGAUAA------------- (((((((((....)))))))))((((((....))))))(((((((((.((.((.----..)).))..)))))..))))((.(((...))).))........------------- ( -33.00, z-score = -1.16, R) >droSec1.super_11 207264 97 + 2888827 CACCUGCAUCAGGAUGCAGGUGAUGCCGUUGGUGGCAUUGAAACGAUACAGCGA----GGCGGUGGCAUCGUGGUUCAUGGAGGAGGCCUGCAAAAGAUAA------------- (((((((((....)))))))))((((((....))))))(((((((((.((.((.----..)).))..)))))..))))((.(((...))).))........------------- ( -33.00, z-score = -1.16, R) >droYak2.chr3L 3936856 97 - 24197627 CACCUGCAUCAGGAUGCAAGUUAUGCCGUUUGUGGCAUUAAAACGAUACAGCGA----GGCGGUGGCAUCGUGGUUCAUGGAGGAGGCCUGGGAAAGAUUU------------- ..((((.((((.(((((..(((((((((....))))))...)))....((.((.----..)).))))))).)))).)).))(((...)))...........------------- ( -25.10, z-score = 0.63, R) >droEre2.scaffold_4784 20022826 97 + 25762168 CACCUGCAUCAGGAUGCAGGUGAUUCCGUUGGUGGCAUUAAAACGAUACAGCGA----GGCGGUGGCAUCGUGGUUCAUGGAGGAGGCCUGGAAAAGAUUU------------- (((((((((....))))))))).(((((.....(((...........((.((((----.((....)).)))).))...........)))))))).......------------- ( -30.35, z-score = -1.03, R) >droAna3.scaffold_13337 6417413 97 + 23293914 CACUUGCAUCAAGAUGCAGGUGAUGCCGUUGGUGGCAUUGAAGCGAUAAAGCGA----GGCAGUAGCAUCAUGAUUCAUCGACGAGGCCUACCAGAGAAGU------------- (((((((((....)))))))))......((((((((.(((..((......))((----.((....)).))............))).))).)))))......------------- ( -29.40, z-score = -1.20, R) >dp4.chrXR_group6 2155588 97 + 13314419 GACCUGCAUUAGGAUGCAGGUGAUUCCGUUGGUGGCAUUGAAGCGGUACAGCGA----GGCAGUGGCAUCAUGGUUCAUCGAUGAUGCCUGCAAAGGGGUU------------- .((((((((....))))))))((((((((((...((......))....))))..----.(((..((((((((.(.....).)))))))))))...))))))------------- ( -38.20, z-score = -2.50, R) >droPer1.super_9 448960 97 + 3637205 GACCUGCAUUAGGAUGCAGGUGAUUCCGUUGGUGGCAUUGAAGCGGUACAGCGA----AGCAGUGGCAUCAUGGUUCAUCGAUGAUGCCUGCAAAGGGGUU------------- .((((((((....))))))))((((((((((...((......))....))))..----.(((..((((((((.(.....).)))))))))))...))))))------------- ( -38.40, z-score = -2.74, R) >droWil1.scaffold_180698 8377574 94 - 11422946 AACUUGCAUUAAAAUGCAGGUUAUUCCAUUUGUGGCAUUAAAACGAUAAAUCGA----AGUGGUCGCUUCAUGAUUCAUUGACGAGGCCUAAAAACAA---------------- (((((((((....)))))))))......((((.(((.......((((.((((((----(((....)))))..)))).)))).....))))))).....---------------- ( -22.40, z-score = -1.80, R) >droMoj3.scaffold_6680 1135779 97 - 24764193 UACUUGCAUAAGAAUGCAGGUGAUGCCAUUAGUAGCAUUUAAGCGAUAAAUCGA----AGUAGUGGCAUCAUGAUUCAUCGAAGAUGCCUGCAAGAGUAUU------------- (((((.........(((((((((((((((((.(.((......))((....))..----).)))))))))).(((....))).....))))))).)))))..------------- ( -27.80, z-score = -2.50, R) >droGri2.scaffold_15110 444399 103 - 24565398 CACCUGCAUGAGUAUGCAUGUGAUGUCAUUGGUGGCAUUUAGACGAUAAAUCGA----UGUGGUCGCAUCAUGGUUCAUUGACGACGCCUGCAACAGAAACAACAAU------- ...........((.((((.(((.(((((.(((..(.(((((.....))))))((----(((....))))).....))).))))).))).))))))............------- ( -22.40, z-score = 1.65, R) >droVir3.scaffold_13049 7164021 100 - 25233164 CACCUGCAUCAGAAUGCAGGUGAUGCCGUUUGUGGCAUUGAAGCGAUAAAUCGA----AGUAGUCGCAUCAUGGUUCAUCGAGGAUGCCUGCAACGGCAACAAU---------- (((((((((....))))))))).(((((((.((((((((....((((.((((((----.((....)).))..)))).))))..)))))).))))))))).....---------- ( -39.70, z-score = -3.57, R) >anoGam1.chr3L 25911036 113 - 41284009 GGUUUGAAUCAGUAUGCACGUUGCUCCACUCGAUCCGUCCAGGCGGUACAGCGACAGGGAGGAUGGCACCGCUGUA-GCCUACGGCGUGUCACGGAGAGCCAAACAAAAAAAAU .(((((..((.............((((..(((..((((....)))).....)))...))))..((((((.((((((-...))))))))))))....))..)))))......... ( -35.00, z-score = -0.40, R) >consensus CACCUGCAUCAGGAUGCAGGUGAUGCCGUUGGUGGCAUUGAAACGAUACAGCGA____GGCGGUGGCAUCAUGGUUCAUCGAGGAGGCCUGCAAAAGAUAU_____________ (((((((((....)))))))))...........(((.......((......))......((....))...................)))......................... (-14.74 = -14.76 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:39:38 2011