| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,287,484 – 20,287,542 |
| Length | 58 |
| Max. P | 0.636027 |
| Location | 20,287,484 – 20,287,542 |
|---|---|
| Length | 58 |
| Sequences | 4 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 73.56 |
| Shannon entropy | 0.42728 |
| G+C content | 0.35483 |
| Mean single sequence MFE | -9.77 |
| Consensus MFE | -6.09 |
| Energy contribution | -6.53 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.636027 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20287484 58 - 24543557 AUACAUUUGCAGAUAUGCAAAGGAAGGCGGAGUUAAAUACUUUGGGAGAUCGAUAUAA .....((((((....))))))......((((((.....)))))).............. ( -9.70, z-score = -1.75, R) >droSim1.chr3L 19658414 58 - 22553184 AUAUAUUUGCAGAUAUGCAAAGGAAGGCGGAGUUAAAUGCUCUGGGAGAUCGAUACUA .....((((((....))))))......((((((.....)))))).............. ( -12.70, z-score = -1.56, R) >droSec1.super_11 195704 58 - 2888827 AUAUAUUUGCAGAUAUGCAAAGGAAGGCGGAGUUAAAUGCUCUGGGAGAUCGAUACAA .....((((((....))))))......((((((.....)))))).............. ( -12.70, z-score = -1.88, R) >droAna3.scaffold_13337 6406596 53 - 23293914 --AUACAUA-AUAUAUGUAAACAAAGCAGGAGUCUAGAAUAUAAAUGGAUCGAUAU-- --.((((((-...))))))..........((.((((.........)))))).....-- ( -4.00, z-score = -0.04, R) >consensus AUAUAUUUGCAGAUAUGCAAAGGAAGGCGGAGUUAAAUACUCUGGGAGAUCGAUACAA .....((((((....))))))......((((((.....)))))).............. ( -6.09 = -6.53 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:39:36 2011