| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,853,638 – 5,853,741 |
| Length | 103 |
| Max. P | 0.737434 |
| Location | 5,853,638 – 5,853,741 |
|---|---|
| Length | 103 |
| Sequences | 8 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 57.17 |
| Shannon entropy | 0.84898 |
| G+C content | 0.52861 |
| Mean single sequence MFE | -30.14 |
| Consensus MFE | -8.87 |
| Energy contribution | -8.76 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.70 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.737434 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5853638 103 + 23011544 CCUUUCAAAAGCGGU-CGCCAA-GAAAAGUCCGUUUUAGCCAGCCCUUUGGCUAUCAGUUCCGCUUCCGGUGGAGCACUUUCGAAUAGGUGGACGGACCGCUUAG-- ........(((((((-(.....-.....(((((..((((((((....)))))))...(((((((.....)))))))..........)..))))).))))))))..-- ( -36.80, z-score = -2.36, R) >droEre2.scaffold_4929 5938195 87 + 26641161 ------------GGA-CCCUCG-CAAAAGUCCGGCUUACGCAGCCCUUUGGCUAUCAGUUCCGCUUCCGGUGGAGCACUUUCGAAUGGGUGGGCCGCCGAG------ ------------(((-(.....-.....))))(((((((.(((((....))))....(((((((.....)))))))..........).)))))))......------ ( -32.70, z-score = -0.63, R) >droYak2.chr2L 8980077 81 - 22324452 -----------CGGU-CGCUAAACAAAAGUCCGAUUUAGCCAGCCCUUUGGCUAUCAGUUCCGCUUCCGGUGGAGCACUUUCCAAUGGGUGGA-------------- -----------(((.-(...........).)))......(((.(((.((((......(((((((.....))))))).....)))).)))))).-------------- ( -25.80, z-score = -1.12, R) >droSec1.super_5 3923509 103 + 5866729 CCUUUCAAAAGCGGU-CGCCAA-CAAAAGUCCGUUUUAGCCAGCCCUUUGGCCAUCAGUUCCGCUUCCGGUGGAGCACUUUCGAAUGGGUGGACGGAACGCUUAG-- ........(((((.(-(((((.-......(((((((..(((((....))))).....(((((((.....)))))))......)))))))))).)))..)))))..-- ( -31.01, z-score = -0.49, R) >droSim1.chr2L 5643442 103 + 22036055 CCUUUCAAAAGCGGU-CGCCAA-CAAAAGUCCGUUUUAGCCAGCCCUUUGGCUAUCAGUUCCGCUUCCGGUGGAGCACUUUCGAAUGGGUGGACGCAACGCUUAG-- ........(((((..-(((((.-......((((((((((((((....)))))))...(((((((.....)))))))......)))))))))).))...)))))..-- ( -33.51, z-score = -1.60, R) >droPer1.super_1 9808525 100 - 10282868 CUUUUAUAAAACGAUACCCUCGACAGACGUCCAGUCCAACUU-CCUUUUAGCUUAGGGCUCCAAUUUCGUUGGGGUAUUGAGGAGUGGGCGUCUUUCUCGG------ .................((..((.(((((((((.(((.....-(((........)))((((((((...)))))))).....))).))))))))).))..))------ ( -35.00, z-score = -3.13, R) >dp4.chr4_group1 4800664 100 - 5278887 CUUUUAUAAAACGAUAGCCCCGACAGACGUCCAGUCCAACUU-CCUUUUAGCUUAGGGCUCCAAUUUCGUUGGGGUAUUGAGGAGGGGGCGUCUUUCUCGG------ ...................((((.((((((((..(((.....-(((........)))((((((((...)))))))).....)))..))))))))...))))------ ( -33.60, z-score = -1.78, R) >droWil1.scaffold_180708 4370595 105 - 12563649 CCUUUUGAAAUCGGA-AGCCAG-UAAACGACCAGCUUAACUUUUCCAACCCCCGUUCCCUUUGCCAUCACCCUAUCCGUUUGCUCUUCCUUCCUUUUUGCUGCUGGU ((....((((..(((-((..((-((((((...............................................))))))))....)))))..))).)....)). ( -12.73, z-score = 0.36, R) >consensus CCUUUCAAAAGCGGU_CGCCAA_CAAAAGUCCGGUUUAGCCAGCCCUUUGGCUAUCAGUUCCGCUUCCGGUGGAGCACUUUCGAAUGGGUGGACGGAUCGC______ ...........................................(((...........(((((((.....)))))))..........))).................. ( -8.87 = -8.76 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:19:55 2011