| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,283,760 – 20,283,870 |
| Length | 110 |
| Max. P | 0.558529 |
| Location | 20,283,760 – 20,283,870 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 67.49 |
| Shannon entropy | 0.62217 |
| G+C content | 0.38485 |
| Mean single sequence MFE | -20.65 |
| Consensus MFE | -8.18 |
| Energy contribution | -9.70 |
| Covariance contribution | 1.52 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.558529 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20283760 110 + 24543557 CCCAAUUUGAGCAGCUUAUUUCGUUAUUUCGUUUGAUAAUUAAAGCGACAAUUAUCGCACUCAUACUUAAAGAGCUCUUUAAAUUGCGUAUACGCCCCGUCUGGCAAUUG ..(((((((((.(((((.(((.((((((......)))))).)))((((......)))).............))))).))))))))).......(((......)))..... ( -23.60, z-score = -2.09, R) >droAna3.scaffold_13337 6403489 95 + 23293914 AUUAAUUCAAUUACAUUA----------UAAUU--AU-GUUGAAGCUGCAAUUACG--AGUCGGUCGUUAUGUGCUUUGAAAAUUGCGUAUACGCCGUGUGUCUGCACUC .(((((..(((((.....----------)))))--..-)))))((.((((..((((--...(((.(((.((((((..(....)..))))))))))))))))..)))))). ( -19.60, z-score = -0.04, R) >droEre2.scaffold_4784 20007843 103 + 25762168 CGUAAUCUAAGCAGUUUG----GAGAAACAGUUUGAUAAAUUA-GCGCUAAUUAUCGCACUCCCUCUUAAAGAGCUCCUUAAAUUGCGUAUUG--CCGGUCUGGCAAUUC ((((((.((((.(((((.----((((...(((.((((((.(((-....))))))))).)))...))))...))))).)))).)))))).((((--((.....)))))).. ( -27.90, z-score = -2.48, R) >droYak2.chr3L 3917885 83 - 24197627 CCUAACUUGAGCAGUUUA----GU----UCGUGUGAUCAUUAACGCAAUAAUUAUAGCACUCCUUCUUAAAAAGCUCUUUAAGUUGUGUAU------------------- ..(((((((((.(((((.----((----(.(((....))).)))((..........)).............))))).))))))))).....------------------- ( -13.60, z-score = -0.76, R) >droSec1.super_11 192128 102 + 2888827 CCCAAUUUGAGCAGCUUA----GU----UUGCUUGAUAAUUAAAGCGACAAUUAUCGCACUUCUUCUUAAAGAGCUCUUUAAAUUGCGUAUACGCCCCGUCUGGCAAUUG ..(((((((((.((((((----(.----.(((..(((((((........))))))))))...)).......))))).))))))))).......(((......)))..... ( -20.11, z-score = -0.66, R) >droSim1.chr3L 19654809 102 + 22553184 CCCAAUUUGAGCAGCUUA----GU----UCGUUUGAUAAUUAAAGCGACAAUUAUCGCACUCCUUCUUAAAGAGCUCUUUAAAUUGCGUAUACGCCCCGUCUGCCAAUUG ..(((((.(.(((((..(----((----((.(((((........((((......))))........)))))))))).........(((....)))...).)))))))))) ( -19.09, z-score = -1.38, R) >consensus CCCAAUUUGAGCAGCUUA____GU____UCGUUUGAUAAUUAAAGCGACAAUUAUCGCACUCCUUCUUAAAGAGCUCUUUAAAUUGCGUAUACGCCCCGUCUGGCAAUUG ..(((((((((.(((((.............((.((((((((........)))))))).))...........))))).)))))))))........................ ( -8.18 = -9.70 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:39:35 2011