| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,279,480 – 20,279,583 |
| Length | 103 |
| Max. P | 0.822906 |
| Location | 20,279,480 – 20,279,583 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 85.08 |
| Shannon entropy | 0.28066 |
| G+C content | 0.54328 |
| Mean single sequence MFE | -34.03 |
| Consensus MFE | -20.92 |
| Energy contribution | -22.25 |
| Covariance contribution | 1.33 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.822906 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20279480 103 - 24543557 UCACGGAUG----CGGAUCCCAAGUGUUGAGAUG-UGUUAGCAGCCAACUUUAUGGCACG-AACAAAGGCGACAGCCACAGGACUCAGCACCCAGGACUCCGGACGACG--- ...((....----(((((((...((((((((.(.-(((.....((((......))))...-......(((....)))))).).))))))))...))).))))..))...--- ( -34.90, z-score = -2.38, R) >droAna3.scaffold_13337 6399921 101 - 23293914 UCACGGAUGCGGACGGAUUCGGGGUGUUGAGCUGCUGUUUGGAGCCAACUUUAUGGCACGAAACAAAGACGACAGCCACAAGACUCUAGA-CCAAGACUCAU---------- ...(((((.(....).)))))((.(((((..((..(((((.(.((((......)))).).))))).)).))))).))....((.(((...-...))).))..---------- ( -29.50, z-score = -1.54, R) >droSim1.chr3L 19650590 103 - 22553184 UCACGGAUG----CGGAUCCCAAGUGUUGAGAUG-UGUUAGCAGCCAACUUUAUGGCACG-AACAAAGGCGACAGCCACAAGACUCAGCAACCAGGACUCUGGACUCCG--- ...(((((.----(((((((....(((((((...-((((....((((......))))...-))))..(((....)))......)))))))....))).)))).).))))--- ( -35.00, z-score = -2.61, R) >droSec1.super_11 187973 103 - 2888827 UCACGGAUG----CGGAUCCCAAGUGUUGAGAUG-UGUUAGCAGCCAACUUUAUGGCACG-AACAAAGGCGACAGCCACAGGACUCAGCAACCAGGACUCCGGACUCCG--- ...(((((.----(((((((....(((((((.(.-(((.....((((......))))...-......(((....)))))).).)))))))....))).)))).).))))--- ( -37.60, z-score = -3.12, R) >droYak2.chr3L 3913557 106 + 24197627 CCACGCAUG----CGGAUCCAAAGUGUUGAGAUG-UGUUAGCAGCCAACUUUAUGGCACG-AACAAAGCCGACAGCCACAAGACUCAGCACCCAGCACCCAGGACUCCGGAC .........----(((((((...((((((((.((-((...((.((((......)))).((-........))...))))))...))))))))...(....).))).))))... ( -27.90, z-score = -1.06, R) >droEre2.scaffold_4784 20003726 106 - 25762168 CCACGGAUG----CGGAUCCAAAGUGUUGAGAUG-UGUUAGCAGCCAACUUUAUGGCACG-AACAAAGGCGACAGCCACAAGUCUCAGCACCCAGGACUCCGGACACUGUUC ..((((.(.----(((((((...((((((((((.-(((.....((((......))))...-......(((....)))))).))))))))))...))).)))).)..)))).. ( -39.30, z-score = -3.30, R) >consensus UCACGGAUG____CGGAUCCCAAGUGUUGAGAUG_UGUUAGCAGCCAACUUUAUGGCACG_AACAAAGGCGACAGCCACAAGACUCAGCACCCAGGACUCCGGACUCCG___ .............(((((((....(((((((....((((....((((......))))....))))..(((....)))......)))))))....))).)))).......... (-20.92 = -22.25 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:39:34 2011