| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,269,251 – 20,269,348 |
| Length | 97 |
| Max. P | 0.998614 |
| Location | 20,269,251 – 20,269,348 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 55.99 |
| Shannon entropy | 0.78335 |
| G+C content | 0.61464 |
| Mean single sequence MFE | -41.95 |
| Consensus MFE | -20.72 |
| Energy contribution | -21.14 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.75 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.42 |
| SVM RNA-class probability | 0.998614 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20269251 97 - 24543557 UUCGCCGUGAGGCGACUACAAUUGCGUGGGCGGCUGUGUCCAUGGGCCGGCUGCUGGAGGAGCACCCGGUCGGUGGGUGCCACACCCACACCCACUU---------------- .(((((....)))))..........(((((.(...(..(((((.((((((.((((.....)))).)))))).)))))..)..).)))))........---------------- ( -50.80, z-score = -2.28, R) >droEre2.scaffold_4784 19992784 77 - 25762168 ----------GUCGCCU--CACGGCGUGGGCGGCAGUGUCCGUGGGUCGGGAGCAGGAGGAGGACAUGGU-GGUGGCCA-UGCCUCCACCU---------------------- ----------((((((.--(((...))))))))).((..(((.....)))..))(((.(((((.((((((-....))))-))))))).)))---------------------- ( -40.10, z-score = -1.91, R) >droYak2.chr3L 3903275 89 + 24197627 UUCGCCGUGAGGCGACUACAAUUGAGUGGGUGGCUGUGUCCAUGGGCCGGGAUUUGGAGGAGGACUUGGU-GGUGGCCA-UGCCUCCACUU---------------------- .(((((....)))))........(((((((.(((.(((.((((.(.(((((.(((......)))))))))-.)))).))-)))))))))))---------------------- ( -38.00, z-score = -1.85, R) >droSec1.super_11 177951 97 - 2888827 UUCGCCGUGAGGCGACUACAAUUGCGUGGGCGGCUGCGUCCAUGGGCCGGCAGCUGGAGGAGGACCCGGUCGGUGGGUGCCACACCCACCUCCACUU---------------- .(((((....))))).........((((((((....))))))))((((((...((......))..))))))((((((((...)))))))).......---------------- ( -48.50, z-score = -1.62, R) >droSim1.chr3L 19640146 86 - 22553184 UUCGCCGUAAGGCGACUACAAUUGCGUGGGCGGCUGUGUCCAUGGGCCGGCAG-----------CCCGGUCGGUGGGUGCCACAACCACCUCCACUU---------------- .(((((....)))))..........(..((.((.(((((((((.((((((...-----------.)))))).)))))...)))).)).))..)....---------------- ( -39.90, z-score = -1.49, R) >droWil1.scaffold_180698 8339623 113 + 11422946 UAUACAUAUAUGUGUGUACACUUACAUGUGUAAGUAUGUCAUUGCGGAAGCUGUGAAACAAUGCCAAAGCGAAGCCUUUUGGCGUAAAAUUUCCAUUGCAAUAUGGUGGCGAU (((((.((((((((((......)))))))))).)))))((((.((....)).)))).....(((((.......(((....))).........((((......))))))))).. ( -34.40, z-score = -2.18, R) >consensus UUCGCCGUGAGGCGACUACAAUUGCGUGGGCGGCUGUGUCCAUGGGCCGGCAGCUGGAGGAGGACCCGGUCGGUGGGUGCCACAUCCACCUCCACUU________________ .(((((....)))))..........(((((.(...(((.((((.((((((...............)))))).)))).)))..).)))))........................ (-20.72 = -21.14 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:39:33 2011