| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,251,891 – 20,251,984 |
| Length | 93 |
| Max. P | 0.851694 |
| Location | 20,251,891 – 20,251,984 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 82.43 |
| Shannon entropy | 0.31914 |
| G+C content | 0.45453 |
| Mean single sequence MFE | -21.23 |
| Consensus MFE | -12.91 |
| Energy contribution | -13.13 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.851694 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20251891 93 + 24543557 CACAGCCAAGGAAAUAACAAACAAAGGAAACCUCAUACAGAUACCUUGGCCGGACGGACAGCUGGCUGGCUAUUAGUGAAAACACGGCCAUAA ....(((((((..............(....).((.....))..))))))).((.((...((((....))))....((....)).)).)).... ( -21.50, z-score = -1.40, R) >droSim1.chr3L 19622735 85 + 22553184 CACGGCCAAGGAAAUAACAAACAAAGGAAACCUCAUACAGAUACCUUGGCCGGACAG--------CUGGCUAUUAGUGAAAACACGGCCAUAA ..(((((((((..............(....).((.....))..))))))))).....--------.(((((....((....))..)))))... ( -25.80, z-score = -4.11, R) >droSec1.super_11 155551 85 + 2888827 CACGGCCAAGGAAAUAACAAACAAAGGAAACCUCAUACAGAUACCUUGGCCGGACAG--------CUGGCUAUUAGUGAAAACACGGCCAUAA ..(((((((((..............(....).((.....))..))))))))).....--------.(((((....((....))..)))))... ( -25.80, z-score = -4.11, R) >droYak2.chr3L 3885961 85 - 24197627 CACAGCCAAGAAAAUAACAAACAAAAGAAACCUCAUACAGAUGCCUUGGCCGGACAG--------CUGGCUAUUAGUGAAAGCACGGCUAUAA ...((((.......................................(((((((....--------)))))))...(((....))))))).... ( -17.90, z-score = -1.29, R) >droEre2.scaffold_4784 19974959 85 + 25762168 CACAGCCAAGGAAAUAACAAACAACAGAAACCUCAUGCAGAUGCCGUGGCCGGACAG--------CUGGCUAUUAGUGAAAACACGGCUAUAA ....((..(((...................)))...))....(((((((((((....--------))))))....((....)))))))..... ( -19.81, z-score = -1.16, R) >droAna3.scaffold_13337 6373846 72 + 23293914 CAUAGGCAAAGGUAAAAUGAACAA------------ACAGACGCCUUGGCCGGACAG---------CUGCUAUUAGUGAAAACUUGGCUAUAA ....(((.(((((....((.....------------.))...))))).)))......---------..((((..(((....)))))))..... ( -16.60, z-score = -1.14, R) >consensus CACAGCCAAGGAAAUAACAAACAAAGGAAACCUCAUACAGAUACCUUGGCCGGACAG________CUGGCUAUUAGUGAAAACACGGCCAUAA ...((((.......................................(((((((............)))))))...(((....))))))).... (-12.91 = -13.13 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:39:32 2011