| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,251,551 – 20,251,602 |
| Length | 51 |
| Max. P | 0.667526 |
| Location | 20,251,551 – 20,251,602 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 82.51 |
| Shannon entropy | 0.24086 |
| G+C content | 0.39848 |
| Mean single sequence MFE | -12.93 |
| Consensus MFE | -9.97 |
| Energy contribution | -10.30 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.667526 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20251551 51 + 24543557 UAGUUGCCAAUCUUUUUGCAACUCAACACA--UGUGGUGUGGACACAAUUUCA-------- .((((((.((....)).)))))).......--((((.......))))......-------- ( -9.30, z-score = -0.01, R) >droSec1.super_11 155189 61 + 2888827 UAGUUGCCAAUCUUUCUGCAACUCAACACACAUGUUGUGUGUACACAAUUUAGCACUUCCA .((((((..........))))))..((((((.....))))))................... ( -12.30, z-score = -1.53, R) >droSim1.chr3L 19622399 61 + 22553184 UAGUUGCCAAUCUUUCGGCAACUCAACACACAUGUUGUGUGUACACAAUUUAGCACUUCCA .(((((((........)))))))..((((((.....))))))................... ( -17.20, z-score = -3.47, R) >consensus UAGUUGCCAAUCUUUCUGCAACUCAACACACAUGUUGUGUGUACACAAUUUAGCACUUCCA .((((((..........))))))...(((((.....))))).................... ( -9.97 = -10.30 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:39:31 2011