Locus 8102

Sequence ID	dm3.chr3L
Location	20,229,636 – 20,229,726
Length	90
Max. P	0.839301

overview

Window 9

Location	20,229,636 – 20,229,726
Length	90
Sequences	12
Columns	111
Reading direction	reverse
Mean pairwise identity	72.24
Shannon entropy	0.53950
G+C content	0.62944
Mean single sequence MFE	-38.20
Consensus MFE	-13.44
Energy contribution	-13.03
Covariance contribution	-0.40
Combinations/Pair	1.36
Mean z-score	-2.25
Structure conservation index	0.35
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.87
SVM RNA-class probability	0.839301
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 20229636 90 - 24543557
CAAAUGGUGGCUGCUGCAGCCGCGGCGGAGUCGGC------AC---CUUCGUCGUCGGUGAUCCAGCA---GCCCGG---GGAUCAAA------CCUCCUUCCGGCCAUAC
...(((((((((((((..((((((((((((.....------..---)))))))).))))....)))))---)))(((---(((.....------..)))..)))))))).. ( -43.40, z-score =  -2.91, R)
>droGri2.scaffold_15110 15388352 108 + 24565398
CAAAUGGU---AGCGGCAGCUGCCGCUGCAGCAGCCGCUGAAUCAACAUCUACCUCUGUCAUACAACAUCCGUCGGCUGGCGAUCAGACGACGUCAUCGUUUCGGCCAUAC
...(((((---((((((.(((((....))))).))))))(((.(............(((......)))..(((((.(((.....))).))))).....).))).))))).. ( -36.00, z-score =  -1.63, R)
>droMoj3.scaffold_6680 19273293 108 - 24764193
CAAAUGGUGGCGGCGGCAGCUGCCGCAGCAGCAGCCGCUGAAUCAACAUCUACCUCUGUCAUACAGCAUCCCGCAGC---CGAUCAGACGACAUCUUCGUUUCGGCCAUAC
...((((((((((((((.(((((....))))).)))))))...............(((.....)))....)))).((---(((...(((((.....))))))))))))).. ( -40.50, z-score =  -2.85, R)
>droVir3.scaffold_13049 18472453 108 - 25233164
CAAAUGGUGGCGGCGGCAGCUGCUGCAGCAGCAGCCGCUGAAUCAACAUCUACCUCUGUCAUACAGCAUCCCGCAGC---CGAUCAGACGACAUCCUCGUUUCGGCCAUAC
...((((((((((((((.(((((....))))).)))))))...............(((.....)))....)))).((---(((...(((((.....))))))))))))).. ( -41.20, z-score =  -2.82, R)
>droWil1.scaffold_180698 3124267 90 - 11422946
CAAAUGGUCGCUGCAGCGGCGGCAGCCGAGGCGAC------GC------CAUCUUCGGUCAUACAGCAACCACCCGC---CGAGUCAU------CCUCCUUCCGGCCAUAU
...(((((((((((....)))))....((((.(((------((------(......)))....(.((........))---.).)))..------)))).....)))))).. ( -27.40, z-score =  -0.03, R)
>droPer1.super_9 387734 87 - 3637205
CAAAUGGUGGCUGCGGCAGCAGCUGCCGAGUCCAC------GC------CCUCCUCCGUCAUUCAGCA---GCCUGC---CGAUCAGA------CCUCCUUCCGGCCAUAC
......(((((((((((((..(((((.((((..((------(.------.......))).)))).)))---))))))---))....((------......))))))))).. ( -31.10, z-score =  -1.87, R)
>dp4.chrXR_group6 2094506 87 - 13314419
CAAAUGGUGGCUGCGGCAGCAGCUGCCGAGUCCAC------GC------CCUCCUCCGUCAUUCAGCA---GCCUGC---CGAUCAGA------CCUCCUUCCGGCCAUAC
......(((((((((((((..(((((.((((..((------(.------.......))).)))).)))---))))))---))....((------......))))))))).. ( -31.10, z-score =  -1.87, R)
>droAna3.scaffold_13337 6352701 93 - 23293914
CAUAUGGUGGCCGCUGCAGCUGCCGCGGAAUCAGC------ACCCUCCUCGUCAUCUGUCAUCCAACA---GCCAGG---GGAUCAGG------CUGCCUUCCGGCCGUAC
..(((((((((.((....)).))).(((((.((((------....(((((.....((((......)))---)...))---)))....)------)))..))))))))))). ( -35.20, z-score =  -1.09, R)
>droEre2.scaffold_4784 19953962 90 - 25762168
CAAAUGGUGGCUGCUGCAGCCGCGGCGGAGUCGGC------AC---CUUCGUCGUCGGUGAUCCAGCA---GCCCGG---GGAUCAAA------CCUCCUUCCGGCCAUAC
...(((((((((((((..((((((((((((.....------..---)))))))).))))....)))))---)))(((---(((.....------..)))..)))))))).. ( -43.40, z-score =  -2.91, R)
>droYak2.chr3L 3854800 90 + 24197627
CAAAUGGUGGCUGCUGCAGCCGCGGCGGAGUCGGC------AC---CUUCGUCGUCGGUGAUCCAGCA---GCCCGG---GGAUCAAA------CCUCCUUCCGGCCAUAC
...(((((((((((((..((((((((((((.....------..---)))))))).))))....)))))---)))(((---(((.....------..)))..)))))))).. ( -43.40, z-score =  -2.91, R)
>droSec1.super_11 134229 90 - 2888827
CAAAUGGUGGCUGCUGCAGCCGCGGCGGAGUCGGC------AC---CUUCGUCGUCGGUAAUCCAGCA---GCCCGG---GGAUCAAA------CCUCCUUCCGGCCAUAC
...(((((((((((((..((((((((((((.....------..---)))))))).))))....)))))---)))(((---(((.....------..)))..)))))))).. ( -42.30, z-score =  -3.12, R)
>droSim1.chr3L 19600596 90 - 22553184
CAAAUGGUGGCUGCUGCAGCCGCGGCGGAGUCGGC------AC---CUUCGUCGUCGGUGAUCCAGCA---GCCCGG---GGAUCAAA------CCUCCUUCCGGCCAUAC
...(((((((((((((..((((((((((((.....------..---)))))))).))))....)))))---)))(((---(((.....------..)))..)))))))).. ( -43.40, z-score =  -2.91, R)
>consensus
CAAAUGGUGGCUGCUGCAGCCGCGGCGGAGUCGGC______AC___CUUCGUCCUCGGUCAUCCAGCA___GCCCGC___CGAUCAAA______CCUCCUUCCGGCCAUAC
...(((((.(..(((((....))))).............................(((...............)))..........................).))))).. (-13.44 = -13.03 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:39:28 2011