| Sequence ID | dm3.chr2L |
|---|---|
| Location | 611,159 – 611,280 |
| Length | 121 |
| Max. P | 0.703869 |
| Location | 611,159 – 611,280 |
|---|---|
| Length | 121 |
| Sequences | 6 |
| Columns | 122 |
| Reading direction | forward |
| Mean pairwise identity | 71.01 |
| Shannon entropy | 0.56262 |
| G+C content | 0.38300 |
| Mean single sequence MFE | -24.03 |
| Consensus MFE | -11.35 |
| Energy contribution | -11.55 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.703869 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 611159 121 + 23011544 -UAAUAUGACGAUUUCCCUUUAGCCAUUCUCAACGCCUACUAAAUUGAGCCAGUUCCUAAUUGGCCAUCUUAUGACCGAAAUUAGUUCUAAUUUCGCACUACUCUGCAGGCAUAAACGACUC -........((..................................((.((((((.....))))))))..(((((.(((((((((....)))))))(((......))).))))))).)).... ( -21.80, z-score = -1.53, R) >droSim1.chr2L 617501 121 + 22036055 -AAUUAUGUGGAUUUCCCUUUAGCCAUCCUCAACGCCUACAAAAUUAAGUCAGUUCUUAAUUGGCCAUCUUACGAUCGAAAUUAGUUCUAAUUUCGCACUACUCUGCAGGCAUAAACGACUC -.....((.((((..(......)..)))).))..((((....(((((((......)))))))...............(((((((....)))))))(((......)))))))........... ( -21.00, z-score = -1.20, R) >droSec1.super_14 593857 121 + 2068291 -AAUUAUGUGGAUUUCCCUUUAGCCAUCCUCAACGCCUACAAAAUUAAGUCAGUUCUUAAUUGGCCACCUUACGAUCGAAAUUAGUUCUAAUUUCGCACUACUCUGCAGGCAUAAACGAGUC -.....((.((((..(......)..)))).))..((((....(((((((......)))))))...............(((((((....)))))))(((......)))))))........... ( -21.00, z-score = -0.79, R) >droYak2.chr2L 600134 118 + 22324452 -UGCUAUG--GAUAUUCCUU-AGGCAUUCUCAGCGCCUAUUAAAUUAAGCCCGCUCUUAAUUGGCCAUCCUAUGAACGAAAUUAGUUCUAAUUUUGCACCACUCUGCAGGCAAAAAAGACUC -((((..(--(((...((.(-((((.........)))))...(((((((......)))))))))..))))...((((.......))))......((((......)))))))).......... ( -22.50, z-score = -0.08, R) >droEre2.scaffold_4929 667208 119 + 26641161 -GGCUAAG--GAUUUGCCUUUAGCCAUCCUCAACGCCAAUAAAAUGAUGCCAGUUCUUAAUUGGCCAUCUUAUGAACGAAAUUAGUUCUAAUUUUGCAGCACUCUGCAGGCAUAAGCGACUC -(((((((--(......)))))))).........(((........(((((((((.....))))).))))....((((.......))))......(((((....))))))))........... ( -33.70, z-score = -2.67, R) >droGri2.scaffold_15252 6973267 121 + 17193109 CAAAUUUUUUAUUAUCAAUUUGGAAUGAAAAAUUUUCUAGCUUCUUGAGUCCAGUUUUA-UCGGGAAAGUUGUAAUAAAUUAGACUUUUCCAAUAGCAUUUUUUUGAGUGCAGCAACAACAA .((((((((((((.((.....))))))))))))))....(((.................-..(((((((((...........)))))))))....((((((....)))))))))........ ( -24.20, z-score = -1.59, R) >consensus _AAAUAUGU_GAUUUCCCUUUAGCCAUCCUCAACGCCUACAAAAUUAAGCCAGUUCUUAAUUGGCCAUCUUAUGAUCGAAAUUAGUUCUAAUUUCGCACUACUCUGCAGGCAUAAACGACUC ..................................((((..........((((((.....))))))............(((((((....)))))))(((......)))))))........... (-11.35 = -11.55 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:06:19 2011