| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,174,918 – 20,175,020 |
| Length | 102 |
| Max. P | 0.611036 |
| Location | 20,174,918 – 20,175,020 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 77.29 |
| Shannon entropy | 0.39626 |
| G+C content | 0.34861 |
| Mean single sequence MFE | -22.36 |
| Consensus MFE | -10.30 |
| Energy contribution | -10.74 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.611036 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20174918 102 - 24543557 AACCCAAUUGAGCUUUAAAAA-ACGAAAAAAACUUGCUUGGACAUAUUGCUGCUG------UGCAU----UCUCUUCAACCAAUUGGAGAAGAAUGAAAUCGAGGGGAAAACU ..(((..(..(((........-.............)))..)..............------..(((----(((((((((....)))))).)))))).......)))....... ( -20.30, z-score = -1.12, R) >droEre2.scaffold_4784 19903934 106 - 25762168 AACCCAAUCGAACCUAAAGAACG---AAAGAACAUACUUGGACAUAUUGCUAUGGGGGAAAUGUAU----UUUCUUAAACCAAUUGAAGAAGAGUGAAAUCGAUUGGAAAACU ...((((((((..........(.---...)....(((((......((((...((((..((.....)----)..))))...)))).......)))))...))))))))...... ( -21.62, z-score = -1.96, R) >droYak2.chr3L 3807520 103 + 24197627 AACCCAUUCGAGCUUAAAGAACG---AAAAAACAUAUUUCGACAUAUUGCUGUAUUG--UAUGUA-----UUUCUUCAACCAAUUGAAGAAGAAUAAAAUCGAAUAGAAAACU .....((((((..(((.......---.....((((((....(((......)))...)--))))).-----(((((((((....)))))))))..)))..))))))........ ( -19.40, z-score = -3.12, R) >droSec1.super_11 84727 106 - 2888827 AACCCAAUCGAGCUUAAGGAACAAAAAAAAAA-AAACAUG--CUUGUUGCUGUAGCGGAAAUGCAU----UUUCUUCAACCAUUCGAAGAAGAAUGAAAUCGAGGGAAAAACU ..(((..(((((((..((.(((((........-.......--.))))).))..))).......(((----(((((((........)))).))))))...)))))))....... ( -22.69, z-score = -1.85, R) >droSim1.chr3L 19462374 113 - 22553184 AACCCAAUCGAACUUAAGGAACGAAAAAAAAACAUGCUUGGACAUGUUGCUGUAGCGGAAAUGCAUUUUCUUUCUUCAAGCAAUUGAAGAAGAAUGAAAUCGAGGGGAAAACU ..(((..((((...........(((((...((((((......))))))......(((....))).)))))(((((((((....))))))))).......)))).)))...... ( -27.80, z-score = -2.36, R) >consensus AACCCAAUCGAGCUUAAAGAACG__AAAAAAACAUACUUGGACAUAUUGCUGUAGCGGAAAUGCAU____UUUCUUCAACCAAUUGAAGAAGAAUGAAAUCGAGGGGAAAACU ...((..((((....................................(((............))).....(((((((((....))))))))).......))))..))...... (-10.30 = -10.74 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:39:23 2011