| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,162,251 – 20,162,365 |
| Length | 114 |
| Max. P | 0.512138 |
| Location | 20,162,251 – 20,162,365 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.80 |
| Shannon entropy | 0.39499 |
| G+C content | 0.33009 |
| Mean single sequence MFE | -24.20 |
| Consensus MFE | -7.91 |
| Energy contribution | -9.07 |
| Covariance contribution | 1.16 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.61 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.512138 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20162251 114 - 24543557 UUGACGAAUCCAAUAA------AAAACUAUUUAUUAACUCAAAUUUCAACCGCAUAGCCAGUAAAAGUUUUUAUAUUUUCGUUGGAGUUACGGAGGUUAUAGGAUUCGAGUCUACAAUUU ....((((((((((((------(......))))))..............(((.....((((..(((((......)))))..)))).....)))........)))))))............ ( -23.10, z-score = -2.09, R) >droEre2.scaffold_4784 19889003 103 - 25762168 UUGGUUGGCUCAAUAA------ACAACUAUUUAUCAACUCAUAUUUGAACCGAACAACCAGCGAAAGUUUU--UAUUUUUGUUGGAGUUAC---------AGGGUUCGAUUCAACCAUAU .((((((..((.((((------(......)))))............(((((.(((..(((((((((((...--.))))))))))).)))..---------..)))))))..))))))... ( -27.80, z-score = -3.91, R) >droYak2.chr3L 3791698 109 + 24197627 UUGGUAGACUCAAUAAAACUAUAAGACUAUUUAUCAACUCAAAUUUCAACCGAAUAACCAGCGAAAGCUUU--UAUUUUUGUUGGAGUUAC---------AGGGUUCGAUUCUGCAAUAU ...(((((.((.............((.......))(((((.(((((((((.((((((..(((....))).)--)))))..)))))))))..---------.))))).)).)))))..... ( -24.30, z-score = -2.74, R) >droSec1.super_11 72618 97 - 2888827 --------------AA------AAAACUAUUUGUCAACUCGAAUUUUAACCGCAUAGCCAGCAAAAGUUUU--UAUUUUCGUUGGAGUUACGG-GGUUAAAGGAUUCGAUUCCACAAUAU --------------..------........((((....(((((((((((((.(.((.(((((.(((((...--.))))).)))))...)).).-))))))..)))))))....))))... ( -23.10, z-score = -2.75, R) >droSim1.chr3L 19450182 111 - 22553184 UUGGUUGACUCAAUAA------AAAACUAUUUAUCAACUCGAAUUUCAACCGCAUAACCAGCAAAAGUUUU--UAUUUUCGUUGGAGUUACGG-GGUUAAAGGGUUCGAUUCCACAAUAU ((((((((...((((.------.....))))..)))))((((((((.((((.(.((((((((.(((((...--.))))).)))))..))).).-))))...)))))))).....)))... ( -22.70, z-score = -1.57, R) >consensus UUGGUUGACUCAAUAA______AAAACUAUUUAUCAACUCAAAUUUCAACCGCAUAACCAGCAAAAGUUUU__UAUUUUCGUUGGAGUUACGG_GGUUA_AGGGUUCGAUUCCACAAUAU ................................((((((((.........(((.....(((((.(((((......))))).))))).....)))........))))).))).......... ( -7.91 = -9.07 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:39:20 2011