| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,159,837 – 20,159,928 |
| Length | 91 |
| Max. P | 0.561782 |
| Location | 20,159,837 – 20,159,928 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 82.47 |
| Shannon entropy | 0.28371 |
| G+C content | 0.51493 |
| Mean single sequence MFE | -27.45 |
| Consensus MFE | -21.98 |
| Energy contribution | -21.73 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.561782 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20159837 91 + 24543557 ---GUUUUUGGUGUUGAAAUGGGCGGCAAAGGGGGGUUUUUUAGGUCGCUAGUGGGCGCACGAGGCGCUUUUCAAUUUCAGUGCAGCAACAAAA ---(((....(..(((((((.((((((..((((.....))))..)))))).(.((((((.....))))))..).)))))))..)...))).... ( -24.90, z-score = -0.85, R) >droYak2.chr3L 3789070 80 - 24197627 ----------GGGUUGAAAUGGGUGG--GAAGGGGGUUUUUUAGGUCGCUAGUGGGUUC--GAGGCGCUUUUCAAUUUCAGUGCAGCAACCAAA ----------.(((((...((((...--((((((.(((((..((.(((....))).)).--))))).))))))...))))......)))))... ( -20.20, z-score = -0.63, R) >droSec1.super_11 70188 92 + 2888827 GUUGGUGUUGGUGUUGGAAUGGGUGGCCAAGGGGG--CUUUUGGGUCGCCAGUGGGCGCAUGAGGCGCUUUUCAAUUUCAGUGCAGCAACAAAA ((((.((((((.(((((((..(((((((((((...--.)))).)))))))....(((((.....)))))))))))).)))..))).)))).... ( -33.50, z-score = -1.85, R) >droSim1.chr3L 19447691 92 + 22553184 GUUGAUGUUGGUGUUGGAAUGGGUGGCCAAGGGGG--UUUUUGGGUCGCCAGUGGGCGCAUGAGGCGCUUUUCAAUUUCAGUGCAGCAACAAAA .(((.((((.(..(((((((.(((((((((((...--.)))).))))))).(.((((((.....))))))..).)))))))..))))).))).. ( -31.20, z-score = -1.69, R) >consensus ___G_UGUUGGUGUUGAAAUGGGUGGCCAAGGGGG__UUUUUAGGUCGCCAGUGGGCGCAUGAGGCGCUUUUCAAUUUCAGUGCAGCAACAAAA ..........(..(((((((.(((((((.(((((...))))).))))))).(.((((((.....))))))..).)))))))..).......... (-21.98 = -21.73 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:39:18 2011