| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,156,425 – 20,156,530 |
| Length | 105 |
| Max. P | 0.964265 |
| Location | 20,156,425 – 20,156,530 |
|---|---|
| Length | 105 |
| Sequences | 9 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 72.51 |
| Shannon entropy | 0.55115 |
| G+C content | 0.62945 |
| Mean single sequence MFE | -38.43 |
| Consensus MFE | -17.45 |
| Energy contribution | -18.47 |
| Covariance contribution | 1.02 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.73 |
| SVM RNA-class probability | 0.964265 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20156425 105 - 24543557 CGACCAGCAGC------CCAUCACCACAAACGCUUCCUCAGCGCCUGGGAACAGCAGUAGGAGCUGCAGCCUGACCAGCGAUAGCAGCUCCAUCCGGCUGACCCGGCUGCA ......(((((------(............((((.....))))...(((..((((....((((((((.((.......))....)))))))).....)))).))))))))). ( -42.80, z-score = -2.65, R) >droSim1.chr3L 19444375 105 - 22553184 CGAGCAGCAGC------CCAUCACAACGAACGCUUCCUCAGCGCCUGGGAACAGCAGUAGGAGCUGCAGCCUGACCAGCGACAGCAGCUCCAUCCGGCUGACCCGGCUGCA ......(((((------(............((((.....))))...(((..((((....((((((((.((.......))....)))))))).....)))).))))))))). ( -42.80, z-score = -1.77, R) >droSec1.super_11 66991 105 - 2888827 CGACCAGCAGC------CCAUCACCACAAACGCUUCCUCAGCGCCUGGGAACAGCAGUAGGAGCUGCAGCCUGACCAGCGAUAGCAGCUCCAUACGGCUGACCCGGCUGCA ......(((((------(............((((.....))))...(((..((((.(((((((((((.((.......))....)))))))).))).)))).))))))))). ( -46.00, z-score = -3.85, R) >droYak2.chr3L 3787050 105 + 24197627 CGACCAGCAGC------CCAUCACCAUAAAUGCUUCCUCUGCUCCGGGGAACAGCAGUAGGAGCUGCAGUUUGACCAGUGAUAGCAGCUCCAUCCGCUUGACCAGGCUGCA ......(((((------(..(((.......(((((((((......)))))..))))...((((((((.(((........))).)))))))).......)))...)))))). ( -40.50, z-score = -2.46, R) >droEre2.scaffold_4784 19883412 105 - 25762168 CGAUCAGCAGC------CCAUCACCACAAACGCUUCCUCUGCACCUGGGAACAGCAGCAGGAGCUGCAGCUUGACCAGCGAUAGCAGCUCCAUCCGGUUGACCAGGCUGCA ......(((((------(..(((((..............(((..(((....)))..)))((((((((.(((.....)))....))))))))....)).)))...)))))). ( -42.00, z-score = -2.68, R) >droAna3.scaffold_13337 6278177 96 - 23293914 CGAUCAGCAGC------CCACCACCACA---------UCCGCACCCGGAAACAGCAGUCGGAGCUGCAGCCUCACCAGCGAAAGCAGCUCCAUCCGGCUGACCCGACUCCA .......((((------(..........---------((((....))))..........((((((((.((.......))....))))))))....)))))........... ( -29.60, z-score = -2.46, R) >dp4.chrXR_group6 2029859 111 - 13314419 CGACCAGCAGCCGAUAUCCAUUACAACGACCACAUCCUCGGCACCGGCCAGCGGCAGCCGGAGCUGCAGCCUCACCAGCGAGAGCAGCUCCGUGCGGCUCACACGACUCCA .((((....((((..............((........))(((....)))..)))).(((((((((((...(((......))).))))))))).)))).))........... ( -38.60, z-score = -1.84, R) >droMoj3.scaffold_6680 19309522 87 - 24764193 -----------------CGAUCAGCCG-------UCGGCUGUUCCGGCCAAUGCCAGCCGCAGCUGCAGCAUCACCAGUGAGAGCAGCUCCGUCCGGAUGACGCGCCUGCA -----------------......((((-------(((((((...)))))....((.(.((.((((((....(((....)))..)))))).)).).))..)))).))..... ( -30.50, z-score = 0.43, R) >droVir3.scaffold_13049 18511240 87 - 25233164 -----------------UGAUCAGCAA-------CCAGCUGGCCCGCCCAAUGCCAGUCGCAGUUGCAGCAUCACCAGCGAGAGCAGCUCGGUGAGGAUAACGCGACUGCA -----------------..........-------...((((((.........)))))).((((((((...(((..((.((((.....)))).))..)))...)))))))). ( -33.10, z-score = -1.75, R) >consensus CGACCAGCAGC______CCAUCACCACAAACGCUUCCUCUGCACCGGGGAACAGCAGUAGGAGCUGCAGCCUGACCAGCGAUAGCAGCUCCAUCCGGCUGACCCGGCUGCA ....................................(((((...)))))....(((((.((((((((.((.......))....))))))))...((.......))))))). (-17.45 = -18.47 + 1.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:39:17 2011