| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,152,396 – 20,152,484 |
| Length | 88 |
| Max. P | 0.620214 |
| Location | 20,152,396 – 20,152,484 |
|---|---|
| Length | 88 |
| Sequences | 7 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 76.97 |
| Shannon entropy | 0.43578 |
| G+C content | 0.53013 |
| Mean single sequence MFE | -32.73 |
| Consensus MFE | -17.84 |
| Energy contribution | -18.52 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.620214 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20152396 88 + 24543557 -GCUUCGGU--GCAGGGCGUUGCAGGACAAUG--AAAAGUGUUCCGGCAUUUGCCGG-GCAAAAAUAAAUUGCUUGCGGCGG-GGUGGCCAACUG---- -((....))--.(((..(((((((((.((((.--.....(((.(((((....)))))-))).......)))))))))))))(-(....))..)))---- ( -32.92, z-score = -1.32, R) >droSim1.chr3L 19440418 88 + 22553184 -GCUUGGCU--GCAGGGCGUUGCAGGACAAUG--AAAAGUGUUCCGGCAUUUGCCGG-GCAAAAAUAAAUUGCUUGCGGCGG-GGUGGCCAACUG---- -..(((((.--.(....(((((((((.((((.--.....(((.(((((....)))))-))).......))))))))))))).-.)..)))))...---- ( -39.42, z-score = -3.20, R) >droSec1.super_11 62998 88 + 2888827 -GCUUGGCU--GCAGGGCGUUGCAGGACAAUG--AAAAGUGUUCCGGCAUUUGCCGG-GCAAAAAUAAAUUGCUUGCGGCGG-GGUGGCCAACUG---- -..(((((.--.(....(((((((((.((((.--.....(((.(((((....)))))-))).......))))))))))))).-.)..)))))...---- ( -39.42, z-score = -3.20, R) >droYak2.chr3L 3781891 89 - 24197627 GCUUUUGGC--GCCGGGCGUUGCAGGACAAUG--AAAAGUGUUCAGACAUUUGCCGG-GCAAAAAUAAAUUGCUUGCGGCGG-GGUGGCCAACUU---- ....(((((--(((...(((((((((.((((.--.....(((((.(.(....)).))-))).......))))))))))))).-))).)))))...---- ( -28.82, z-score = -0.16, R) >droEre2.scaffold_4784 19879573 88 + 25762168 GCUUUUGGU--GCCGCGCGUUGCAGGACAAUG--AAAAGUGUUUGGGCAUUCGCCGG-GCAAAAAUAAAUUGCUUGCAGCGG--GCGGCCAACUG---- ......(((--(((((.(((((((((.((((.--.....(((((((.......))))-))).......))))))))))))).--)))))..))).---- ( -38.42, z-score = -2.66, R) >droAna3.scaffold_13337 6274616 87 + 23293914 -GCUUUUGUCGGCGGGCGUUUGCAAGACAAUG-------CGAU---GCAUUUGCCGGCAAAAAAAUAAAUUGCUUGCAGCAG-CGUGCCAGGCCGCUUG -(((((((((((((.(((((.(((......))-------))))---))...))))))))))).........(((((..((..-...))))))).))... ( -30.20, z-score = 0.12, R) >droWil1.scaffold_180698 8216850 89 - 11422946 -GCUAUGGU--GCAGCUUCUUGCAAGACAAUGGAAAAAAAGACUUGGC-UUUGCCGG-A-AAAAGUAAAUUGCUUGCAACGAAGGCGAACAACUG---- -((......--))..(((((((((((.((((............(((((-...)))))-.-........))))))))))).))))...........---- ( -19.90, z-score = -0.15, R) >consensus _GCUUUGGU__GCAGGGCGUUGCAGGACAAUG__AAAAGUGUUCCGGCAUUUGCCGG_GCAAAAAUAAAUUGCUUGCGGCGG_GGUGGCCAACUG____ ...........((....(((((((((.((((........(((.(.(((....))).).))).......)))))))))))))...))............. (-17.84 = -18.52 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:39:16 2011