| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,150,180 – 20,150,283 |
| Length | 103 |
| Max. P | 0.596492 |
| Location | 20,150,180 – 20,150,283 |
|---|---|
| Length | 103 |
| Sequences | 12 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 65.65 |
| Shannon entropy | 0.73433 |
| G+C content | 0.61038 |
| Mean single sequence MFE | -37.13 |
| Consensus MFE | -13.42 |
| Energy contribution | -12.47 |
| Covariance contribution | -0.96 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.596492 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20150180 103 + 24543557 --GUGAGAGCAUCAGCGAAGGCAUCCGCCGCACGACCUGCGGUGCCUGCGUGUAAAUUGUGGGUGGGUGGUGCGGUGAAGCGUGCGAGGAGGGCUGAGGUGCCGA------- --((....)).........((((((((((((((.((((.....(((..((.......))..))))))).)))))))).(((.(.......).)))..))))))..------- ( -42.90, z-score = -0.98, R) >droSim1.chr3L 19437912 103 + 22553184 --GCGAGAGCAUCAGCGAAGGCAUCCGCCGCACGAUCUGCGGUGCCUGCGUGUAAAUUGUGGGUGGGUGGUGCGGUGGGGAGUGCGAGAAGGGCUGUGGUGCCGA------- --....(.((((((((....)).((((((((((.((((.....(((..((.......))..))))))).)))))))))).(((.(.....).))).)))))))..------- ( -44.50, z-score = -1.59, R) >droSec1.super_11 60678 103 + 2888827 --GCGAGAGCAUCAGCGAAGGCAUCCGCCGCACGAUCUGCGGUGCCUGCGUGUAAAUUGUGGGUGGGUGGUGCGGUGGGGAGUGCGAGGAGGGCUGUGGUGCCGA------- --....(.((((((((....)).((((((((((.((((.....(((..((.......))..))))))).)))))))))).(((.(.....).))).)))))))..------- ( -44.50, z-score = -1.41, R) >droYak2.chr3L 3779485 100 - 24197627 --GCGAGAGCAUCAGCGAAGGCAUCCGCCGCACGAUCUGCGGUGCCUGCGUGUAAAUAGUGGGUGGGUGGUGCGGUGGGGUGUGCGAG---GGUAGUGGUGCCGA------- --.((...(((((.((....))..(((((((((.((((.....(((..(.........)..))))))).)))))))))))))).))..---((((....))))..------- ( -43.00, z-score = -1.61, R) >droEre2.scaffold_4784 19877372 100 + 25762168 --GCGAGAGCAUCAGGGAAGGCAUCCGCCGCACGAUCUGCGGUGCCUGGGUGUAAAUUGUGGGUGGGUGGUGCGGUGGGGCGUGCGAG---GAUUGUGGUGCCGC------- --((....))....((.(..((((((..((((((..(..(.(..((......................))..).)..)..)))))).)---)).)))..).))..------- ( -38.05, z-score = -0.16, R) >droWil1.scaffold_180698 8212816 109 - 11422946 CAGUGAGAGCAUUAGUGACGGUGUUCGCCGGACAAUUUGUGGCGCUUGGGUAUAGAUCGUUGGCGGAUGAGAUUGAAAAAUUUGACUUGAUUCGGUUUUAUCCAACUAA--- .(((..(((((((......)))))))((((.((.(((((((.(.....).))))))).))))))(((((((((((((.............))))))))))))).)))..--- ( -31.82, z-score = -1.80, R) >droGri2.scaffold_15110 15421084 98 - 24565398 --GCGAGAGCAUCAGGGACGGCGAUCGACGCACAAAUUGUGGAGCUUGUGUAUAAAUCGUGGGCGGUGGACAAGUUGUGGUCGUAUGGGUUGAGUGUGGA------------ --((....)).(((.(..((((...((((.(((((.((((...(((..((.......))..))).....)))).))))))))).....))))..).))).------------ ( -28.10, z-score = -0.79, R) >droMoj3.scaffold_6680 19305766 98 + 24764193 --GCGAGAGCAUCAGGGACGGCGAUCGGCGCACAAAUUGUGGUGUUUGCGUAUAAAUCGUGGGCGGUGGAACAGUUGUGGGCGUGGUGUGUGGUUGUUGC------------ --((....))..(((.(((.(((((((((.(((((.(((((.((((..((.......))..)))).)...))))))))).)).)))).))).))).))).------------ ( -33.20, z-score = -1.74, R) >droVir3.scaffold_13049 18507495 95 + 25233164 --GCGAGAGCAUCAGGGACGGAGAUCGGCGCACAAAUUGUGGAGCCUGCGUAUAAAUCGUGGGCGGUGGACAAGUUGUGG--GCAUGGUUU--GUGAAGAC----------- --((....))........((.((((((((.(((((.((((...(((..((.......))..))).....)))).))))).--)).))))))--.)).....----------- ( -33.70, z-score = -2.98, R) >droPer1.super_9 317008 90 + 3637205 GAGUGAGAGCAUCAGCGACGGUGCCCGACGCACGAUCUGCGGUGCUUGGGUGUAAAUUGUGGGUGGGUGA---GGCACGGACUGGGGCGCCAG------------------- ((((....)).))......(((((((.((.((((((.((((.(.....).)))).)))))).))..(((.---..)))......)))))))..------------------- ( -30.10, z-score = 0.71, R) >dp4.chrXR_group6 2023873 90 + 13314419 GAGUGAGAGCAUCAGCGACGGUGCCCGACGCACGAUCUGCGGUGCUUGGGUGUAAAUUGUGGGUGGGUGG---GGCACGGACUGGGGCGCCAG------------------- ((((....)).)).....(.((((((.((.(((...(..((((((......))..))))..)))).)).)---))))).).((((....))))------------------- ( -32.70, z-score = 0.06, R) >droAna3.scaffold_13337 6272525 112 + 23293914 UAGCGAGAGCAUCAGCGACGGUGUCCGCCGCACAAUCUGCGGUGCCUGGGUGUAUAUGGUGGGUGGGUGGUGCGGCAGAGGCUGUGCCGGUGGUGGGUGAGUGUGGUGAGGU ..((....)).(((.((((..(..(((((((((.(((..(.((((......))))...)..)))..))((..((((....))))..)).)))))))..).)).)).)))... ( -43.00, z-score = -0.64, R) >consensus __GCGAGAGCAUCAGCGACGGCGUCCGCCGCACGAUCUGCGGUGCCUGCGUGUAAAUUGUGGGUGGGUGGUGCGGUGGGGACUGCGAGGAUGGUUGUGGUGCC_________ ..((....))...........((((((.(.(((....((((.........))))....))).)))))))........................................... (-13.42 = -12.47 + -0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:39:15 2011