| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,149,714 – 20,149,773 |
| Length | 59 |
| Max. P | 0.500000 |
| Location | 20,149,714 – 20,149,773 |
|---|---|
| Length | 59 |
| Sequences | 5 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 92.01 |
| Shannon entropy | 0.13599 |
| G+C content | 0.44103 |
| Mean single sequence MFE | -13.30 |
| Consensus MFE | -13.14 |
| Energy contribution | -12.82 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.12 |
| Mean z-score | -0.62 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3L 20149714 59 - 24543557 GGGUAUCAAAUGA------AUCAACUGAAGCCCUUGAUUCACCUGGUCAAAAGACAAACAGAUCU ((((.(((.....------......))).))))..((((......(((....))).....)))). ( -10.80, z-score = -0.50, R) >droEre2.scaffold_4784 19876865 64 - 25762168 GGGUAUCAAGUGAGUGGGUAUCAACUGGAGCCCUUGAUUCACCUGGUCAAAAGACAAACAGAUC- ......((.((((((((((.((....)).))))...)))))).))(((....))).........- ( -14.70, z-score = 0.02, R) >droYak2.chr3L_random 856555 58 - 4797643 GGGUAUCAAGUGA------AUCAACUGGAGCCCCUGAUUCACCUGGUCAAAAGACAAACAAAUC- ......((.((((------((((...((....)))))))))).))(((....))).........- ( -13.30, z-score = -1.02, R) >droSec1.super_11 60200 59 - 2888827 GGGUAUCAAGUGA------AUCAACUGGAGCCCAUGAUUCACCUGGUCAAAAGACAAACAGAUCU ((((..((.((((------((((..(((...))))))))))).))(((....)))......)))) ( -14.20, z-score = -1.00, R) >droSim1.chr3L 19437440 59 - 22553184 GGGUAUCAAGUGA------AUCAACUGGAGCCCUUGAUUCACCUGGUCAAAAGACAAACAGAUCU ((((..((.((((------(((((..((...))))))))))).))(((....)))......)))) ( -13.50, z-score = -0.61, R) >consensus GGGUAUCAAGUGA______AUCAACUGGAGCCCUUGAUUCACCUGGUCAAAAGACAAACAGAUCU ((((.(((..(((.......)))..))).))))..((((......(((....))).....)))). (-13.14 = -12.82 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:39:14 2011