| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,120,959 – 20,121,061 |
| Length | 102 |
| Max. P | 0.549315 |
| Location | 20,120,959 – 20,121,061 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 77.29 |
| Shannon entropy | 0.40020 |
| G+C content | 0.45179 |
| Mean single sequence MFE | -24.98 |
| Consensus MFE | -14.21 |
| Energy contribution | -15.05 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.549315 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20120959 102 - 24543557 GCCAAAUCGGAAACGAUCAUCAUCUUGU-UCCCGAGCCGAUGC--AAAUGUACAUUUAUCUCU--CACUCUUUUAUGGCAUUCCCGGCCAUUAAAAUCC-CCAUCGGC----------- ......((((.(((((........))))-).))))(((((((.--((((....))))......--.....(((.(((((.......))))).)))....-.)))))))----------- ( -23.90, z-score = -2.34, R) >droAna3.scaffold_13337 18269611 115 + 23293914 ----GCCCUGCAGCGAAGAGUGUAUUGUAAUCUGAUCUGCCGCUUAAAUGCAAAUUAAUUUUUUCUACUCAUUUAUAGCAUUCUCGGUUAUAAAGAACAAAAAUCCCCAUACACAUGGC ----(((((.......)).(((((((((..(((.....((((....(((((..........................)))))..)))).....)))))).........))))))..))) ( -15.77, z-score = 0.96, R) >droEre2.scaffold_4784 19849166 99 - 25762168 GCCAGAUCGGAAACGAU---UAUCUUGU-UCCCGAGCCGAUGC--AAAUGUACAUUUAUCUCU--GGCUCUUUUAUGGCAUUCCCGGCCAUUAAAAGGC-CCAUCGGC----------- ......((((.(((((.---....))))-).))))(((((((.--((((....))))......--(((.((((((((((.......)))).))))))))-))))))))----------- ( -32.80, z-score = -2.92, R) >droYak2.chr3L 3744423 100 + 24197627 GACAGAUCGGAAACGAU---UAUCUUGU-UCCCUAGCCGAUGC--AAAUGUACAUUUAUCUCU--GGCUCUUUUAUGGCAUUCCCGGCCAUUAAAAAUCGCCAUCGGC----------- (((((((((....))))---)....)))-).....((((((((--....)))..........(--(((..(((((((((.......)))).)))))...)))))))))----------- ( -26.70, z-score = -2.05, R) >droSec1.super_11 30738 102 - 2888827 GCCAAAUCGGAAACGAUCAUCAUCUUGU-UCCCGAGCCGAUGC--AAAUGUACAUUUAUCUGU--GGCUCUUUUAUGGCAUUCCCGGCCAUUAAAAUCC-CCAUCGGC----------- ......((((.(((((........))))-).))))((((((((--(.(((......))).)))--((...(((((((((.......)))).)))))...-))))))))----------- ( -25.80, z-score = -1.41, R) >droSim1.chr3L 19409200 102 - 22553184 GCCAAAUCGGAAACGAUCAUCAUCUUGU-UCCCGAGCCGAUGC--AAAUGUACAUUUAUCUCU--GGCUCUUUUAUGGCAUUCCCGGCCAUUAAAAUCC-CCAUCGGC----------- ......((((.(((((........))))-).))))(((((((.--((((....))))......--((...(((.(((((.......))))).)))...)-))))))))----------- ( -24.90, z-score = -1.47, R) >consensus GCCAAAUCGGAAACGAUCAUCAUCUUGU_UCCCGAGCCGAUGC__AAAUGUACAUUUAUCUCU__GGCUCUUUUAUGGCAUUCCCGGCCAUUAAAAUCC_CCAUCGGC___________ ........(((.((((........)))).)))...(((((((...((((....)))).............(((((((((.......))))).)))).....)))))))........... (-14.21 = -15.05 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:39:08 2011