| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,098,320 – 20,098,414 |
| Length | 94 |
| Max. P | 0.765280 |
| Location | 20,098,320 – 20,098,414 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 70.89 |
| Shannon entropy | 0.44502 |
| G+C content | 0.33198 |
| Mean single sequence MFE | -17.73 |
| Consensus MFE | -8.24 |
| Energy contribution | -10.18 |
| Covariance contribution | 1.94 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.765280 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20098320 94 + 24543557 ------------GCGUUAUUAAAUUUUGUGACUAUUUUACACAUAAAUGUCUAGA--ACUGAUAAUUAAUUGUUAUCCUGUUCAUUCGCCUCUGAACAGAAA-UAACCG ------------(.((((((...(((((.(((.((((.......)))))))))))--)..((((((.....))))))(((((((........))))))).))-))))). ( -17.20, z-score = -2.69, R) >droSim1.chr3L 19394020 97 + 22553184 ------------GCGUUAUAACAUUUUUGGACUAUUUUACACAUAAAUGUCUAGAGAACUGAUAAUCCAUUGCUAUCCUGUUCAUCCGCCUCUGAACAGAAAAUAACCG ------------(.(((((....(((((((((.((((.......)))))))))))))....................(((((((........)))))))...)))))). ( -18.70, z-score = -2.94, R) >droSec1.super_11 14271 84 + 2888827 ------------GCGUUAUAACAUUUUUGGACUAUUGUACACAUAAAUGUCUAGAGAACUUAUAAUCAAU-------CUGAACA------UCUGAACAGAAAAUAACCG ------------..(((((((..(((((((((..((((....))))..)))))))))..)))))))...(-------(((..(.------...)..))))......... ( -12.90, z-score = -1.55, R) >droYak2.chr3L_random 3492223 106 + 4797643 AAUGAAUACCUUGUGUUAUUUAGUUUGUUGACUACUUUGCAAGUAAAUGUUUAGA--AUUGGUUAUCACAUGUUAUCCUGUGCAUUAGCCUCUGGACAGAGU-UAACCG ..((((((.(....).))))))....((((((((((.....)))...((((((((--...(((((.((((.(....).))))...))))))))))))).)))-)))).. ( -22.10, z-score = -0.90, R) >consensus ____________GCGUUAUAAAAUUUUUGGACUAUUUUACACAUAAAUGUCUAGA__ACUGAUAAUCAAUUGUUAUCCUGUUCAUUCGCCUCUGAACAGAAA_UAACCG ..............(((((((....(((((((...((((....)))).)))))))....)))))))...........(((((((........))))))).......... ( -8.24 = -10.18 + 1.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:39:07 2011