| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,790,368 – 5,790,464 |
| Length | 96 |
| Max. P | 0.849949 |
| Location | 5,790,368 – 5,790,464 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 69.48 |
| Shannon entropy | 0.54549 |
| G+C content | 0.44409 |
| Mean single sequence MFE | -23.58 |
| Consensus MFE | -10.46 |
| Energy contribution | -12.30 |
| Covariance contribution | 1.84 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.849949 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5790368 96 - 23011544 AUCCAAUUUCGCUUUUAUUUCUCUACCCCGCCCAUCAGAUCGGGUAAACAAUUUUGUUUUGGGUCUGGUUGGCGGUAUCU-UUAUGUGAGUCCCUAG ..........((((.(((.........(((((.((((((((.(..(((((....)))))).)))))))).))))).....-..))).))))...... ( -23.89, z-score = -1.60, R) >droSim1.chr2L 5588808 96 - 22036055 AUCCAAUUUCGCUUUUAUUUCUCUACUCCGCCCACCAGAUCGGGUAAACAUGUUUGUUUGGGUUCUGGUUGGCGGUAUCU-UUAUGUGAGUCCCUAG ..........((((.(((.........(((((.(((((((((..((((....))))..)))..)))))).))))).....-..))).))))...... ( -25.19, z-score = -1.92, R) >droYak2.chr2L 8923744 94 + 22324452 -UCCAAUUUCGCUUUUAUUUCUCUACCCCGCCCACCAGAUCGGGUAAACAUGUUUGCUUUGG-UCUGGCUGCCGGUAUCG-UUAUGUAAGUGCCUAG -........(((((.(((..(..((((..((...((((((((((((((....))))).))))-)))))..)).))))..)-..))).)))))..... ( -25.30, z-score = -2.16, R) >droEre2.scaffold_4929 5882409 94 - 26641161 -UCCAAUUUCGCUUUUAUUAGUCCACCCCGCCCACCAGAUCGGGUAAACAUGUUUGCUUGGG-UCUGGCCGGCGGUAUCU-UUAUGUGAGUCCCUAG -......(((((...((..((......(((((..((((((((((((((....))))))).))-)))))..)))))...))-.)).)))))....... ( -28.00, z-score = -1.72, R) >droWil1.scaffold_180708 4220934 81 + 12563649 ------------UUCAAUUUCCUUUUGGCGCUGA-AAGUUUAUGCAAAUAUGCAUAUUCAAAGUAGCACUGGAAUUAUCUACUCCACAAGUACA--- ------------..........(((..(.((((.-..(..((((((....))))))..)....)))).)..))).....((((.....))))..--- ( -15.50, z-score = -1.41, R) >consensus _UCCAAUUUCGCUUUUAUUUCUCUACCCCGCCCACCAGAUCGGGUAAACAUGUUUGUUUGGG_UCUGGCUGGCGGUAUCU_UUAUGUGAGUCCCUAG ...........................(((((..((((((((((((((....)))))))))..)))))..)))))...................... (-10.46 = -12.30 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:19:51 2011