| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,092,404 – 20,092,533 |
| Length | 129 |
| Max. P | 0.725711 |
| Location | 20,092,404 – 20,092,524 |
|---|---|
| Length | 120 |
| Sequences | 13 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.30 |
| Shannon entropy | 0.41451 |
| G+C content | 0.46667 |
| Mean single sequence MFE | -36.82 |
| Consensus MFE | -19.65 |
| Energy contribution | -20.04 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.692870 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20092404 120 + 24543557 UGGAAUCGGAGCAGAUGGCUAGGAUUAUUGUCGCCACAUAGAUCAUGGUGAUGAUGAGCCACCGAAACGAGAUCAGUUCGCUGGCAUUCGAGAAGCUCCAGCGACAGAUGUCCAUCCUAC .(((.(((((((.....))).((.((((..((((((.........))))))..)))).)).))))...((.(((.((.((((((..((....))...)))))))).))).))..)))... ( -40.90, z-score = -2.05, R) >droSim1.chr3L 19387198 120 + 22553184 UGGAAUCGGAGCAGAUGGUUAGGAUUAUUGUCGCCACAUAGAUCAUGGUGAUGAUGAGCCACCGAAACGAGAUCAGUUCGCUGGCGUUCGAGAAGCUCCAGCGACAGAUGUCCAUCCUAC .(((.(((((((.....))).((.((((..((((((.........))))))..)))).)).))))...((.(((.((.((((((.(((.....))).)))))))).))).))..)))... ( -41.60, z-score = -2.29, R) >droSec1.super_11 8420 120 + 2888827 UGGAAUCGGAGCAGAUGGUUAGGAUUAUUGUCGCCACAUAGAUCAUGGUGAUGAUGAGCCACCGAAAGGAGAUCAGUUCGCUGGCGUUCGAGAAGCUCCAGCGACAGAUGUCCAUCCUAC .(((.(((((((.....))).((.((((..((((((.........))))))..)))).)).))))..(((.(((.((.((((((.(((.....))).)))))))).))).))).)))... ( -45.70, z-score = -3.42, R) >droYak2.chr3L 3727141 120 - 24197627 UGGAAUCGGAGCAAAUAGUUAGGAUUAUUGUCGCCACAUAGAUCAUGGUGAUGAUAAGCCACCGAAACGAGAUCAGUUCGCUGGCAUUCGAGAAGCUCCAGCGACAGAUGUCCAUCCUAC .(((.(((((((.....))).((.((((..((((((.........))))))..)))).)).))))...((.(((.((.((((((..((....))...)))))))).))).))..)))... ( -38.50, z-score = -2.79, R) >droEre2.scaffold_4784 19830286 120 + 25762168 UGGAAUCGGAGCAAAUAGUGAGGAUUAUUGUCGCCACGUAGAUCAUGGUGAUGAUGAGCCACCGAAACGAGAUCAGUUCGCUGGCGUUCGAGAAGCUCCAGCGACAGAUGUCCAUCCUAC .(((.((((.((.....))..((.((((..((((((.(.....).))))))..)))).)).))))...((.(((.((.((((((.(((.....))).)))))))).))).))..)))... ( -42.10, z-score = -2.63, R) >droAna3.scaffold_13337 18252222 120 - 23293914 UGGAAUCGGAGCAGAUUGUAAGGAUUAUUGUCGCCACAUAGAUCAUGGUGAUGAUGAGCCAGCGAAACGAGAUGAGUUCGCUGGCAUUCGAGAAGCUCCAGCGACAGAUGUCCAUGCUGA .......(((((............((((..((((((.........))))))..))))(((((((((.(.......)))))))))).........)))))((((((....)))...))).. ( -42.60, z-score = -2.63, R) >dp4.chrXR_group6 4675190 120 + 13314419 UCGAAUCGGAGCAGAUCGUUAGGAUUAUUGUCGCAACGUAGAUCAUUGUGAUGAUGAGCCAACGGAAUGAUAUAAGUUCACUGGCACUCGAGAAGCUCCAGCGACAAAUGUCCAUGCUAU .......(((((...(((......((((..((((((.(.....).))))))..))))((((...((((.......))))..))))...)))...)))))((((((....)))...))).. ( -35.10, z-score = -1.40, R) >droPer1.super_9 2975818 120 + 3637205 UCGAAUCAGAGCAGAUCGUUAGGAUUAUUGUCGCAACGUAGAUCAUUGUGAUGAUGAGCCAACGGAAUGAUAUAAGUUCACUGGCACUCGAGAAGCUCCAGCGACAAAUGUCCAUGCUAU .........((((..(((((.((.((((..((((((.(.....).))))))..)))).)))))))...(((((..((.(.((((..((.....))..)))).)))..)))))..)))).. ( -31.40, z-score = -0.58, R) >droWil1.scaffold_180698 1255472 120 + 11422946 UAGAGUCCGAGCAUAUGGUGAGUAUUAUUGUCGCUAUGUAGAUCAUUGUGAUGAUGAGCCAACGAAAUGAUAUCAGUUCGCUGGCAUUUGAAAAGCUCCAACGACAAAUGUCCAUGCUGU .........(((((...(.((((.((((..((((.(((.....))).))))..))))((((.((((.((....)).)))).)))).........)))))...(((....))).))))).. ( -34.20, z-score = -1.86, R) >droVir3.scaffold_13049 18278870 120 + 25233164 UGGAAUCGGAGCAUAUGGUUAGGAUUAUUGUUGCAAUAUAGAGCAUUGUGAUGAUAAGCCAGCGAAAAGAUAUUAAUUCGCUGGCAUUCGAGAAGCUCCAGCGACAAAUGUCCAUGCUGG .......(((((............((((..(..((((.......))))..)..))))(((((((((..........))))))))).........)))))((((((....)))...))).. ( -38.60, z-score = -2.89, R) >droMoj3.scaffold_6680 19059219 120 + 24764193 UGGAGUCGGAGCAUAUAGUCAGGAUUAUUGUUGCGAAGUACAGCAUUGUGAUGAUCAGCCAUCGGAAUGAUAUUAGCUCGCUGGCAUUCGAGAAGCUCCAGCGACAUAUGUCCAUGCUGA .....(((.((((.(((((....))))))))).)))....(((((((.(((((......))))).)))(((((....(((((((..((....))...)))))))...)))))...)))). ( -34.50, z-score = -0.01, R) >droGri2.scaffold_15110 15200467 120 - 24565398 UGGAAUCGGAGCAUAUUGUUAGGAUUAUGGUUGCAAUAUAUAACAUUGUGAUGAUUAGCCAACGAAACGAUAUUAAUUCACUGGCAUUUGAGAAGCUCCAACGACAAAUGUCCAUGCUAA (((....(((((...(((((.((...((.((..((((.......))))..)).))...)))))))...........((((........))))..)))))...(((....)))....))). ( -25.20, z-score = -0.40, R) >anoGam1.chr3L 6251820 108 - 41284009 UCGUGCCAGCCGACAGACUCAGUAUGAUCGUCAUCACGUAGAUCAUGAUGAUGAAGAUCGAACGGAACGAGAU------------GUUCGUAUCGCCCCCGUACGCAAUGUCCAUUCUAC ...........((((......(((((.(((((((((.(.....).))))))))).(((((((((........)------------))))).))).....)))))....))))........ ( -28.20, z-score = -0.20, R) >consensus UGGAAUCGGAGCAGAUGGUUAGGAUUAUUGUCGCCACAUAGAUCAUGGUGAUGAUGAGCCAACGAAACGAGAUCAGUUCGCUGGCAUUCGAGAAGCUCCAGCGACAAAUGUCCAUGCUAC ........((((............((((((((((((.........))))))))))))((((..(((..........)))..)))).........))))....(((....)))........ (-19.65 = -20.04 + 0.39)
| Location | 20,092,414 – 20,092,533 |
|---|---|
| Length | 119 |
| Sequences | 13 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 79.93 |
| Shannon entropy | 0.46449 |
| G+C content | 0.44272 |
| Mean single sequence MFE | -33.46 |
| Consensus MFE | -16.58 |
| Energy contribution | -16.98 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.725711 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20092414 119 + 24543557 GCAGAUGGCUAGGAUUAUUGUCGCCACAUAGAUCAUGGUGAUGAUGAGCCACCGAAACGAGAUCAGUUCGCUGGCAUUCGAGAAGCUCCAGCGACAGAUGUCCAUCCUACAAAUUUGAA .(((((...(((((((((..((((((.........))))))..))))...........((.(((.((.((((((..((....))...)))))))).))).))..)))))...))))).. ( -35.90, z-score = -1.59, R) >droSim1.chr3L 19387208 119 + 22553184 GCAGAUGGUUAGGAUUAUUGUCGCCACAUAGAUCAUGGUGAUGAUGAGCCACCGAAACGAGAUCAGUUCGCUGGCGUUCGAGAAGCUCCAGCGACAGAUGUCCAUCCUACAAAUUUUAA ...((((....((.((((..((((((.........))))))..)))).))........((.(((.((.((((((.(((.....))).)))))))).))).))))))............. ( -37.10, z-score = -2.29, R) >droSec1.super_11 8430 119 + 2888827 GCAGAUGGUUAGGAUUAUUGUCGCCACAUAGAUCAUGGUGAUGAUGAGCCACCGAAAGGAGAUCAGUUCGCUGGCGUUCGAGAAGCUCCAGCGACAGAUGUCCAUCCUACAAAUUUGAA .(((((...(((((((((..((((((.........))))))..))))..........(((.(((.((.((((((.(((.....))).)))))))).))).))).)))))...))))).. ( -43.10, z-score = -3.58, R) >droYak2.chr3L 3727151 117 - 24197627 GCAAAUAGUUAGGAUUAUUGUCGCCACAUAGAUCAUGGUGAUGAUAAGCCACCGAAACGAGAUCAGUUCGCUGGCAUUCGAGAAGCUCCAGCGACAGAUGUCCAUCCUACAAAUGAA-- .......((.((((((((..((((((.........))))))..))))...........((.(((.((.((((((..((....))...)))))))).))).))..)))))).......-- ( -32.00, z-score = -1.92, R) >droEre2.scaffold_4784 19830296 118 + 25762168 GCAAAUAGUGAGGAUUAUUGUCGCCACGUAGAUCAUGGUGAUGAUGAGCCACCGAAACGAGAUCAGUUCGCUGGCGUUCGAGAAGCUCCAGCGACAGAUGUCCAUCCUACAAGUUGAA- .(((....((((((((((..((((((.(.....).))))))..))))...........((.(((.((.((((((.(((.....))).)))))))).))).))..)))).))..)))..- ( -37.50, z-score = -2.11, R) >droAna3.scaffold_13337 18252232 116 - 23293914 GCAGAUUGUAAGGAUUAUUGUCGCCACAUAGAUCAUGGUGAUGAUGAGCCAGCGAAACGAGAUGAGUUCGCUGGCAUUCGAGAAGCUCCAGCGACAGAUGUCCAUGCUGAAAGAAA--- ((............((((..((((((.........))))))..))))(((((((((.(.......)))))))))).........))..(((((((....)))...)))).......--- ( -37.00, z-score = -2.31, R) >dp4.chrXR_group6 4675200 117 + 13314419 GCAGAUCGUUAGGAUUAUUGUCGCAACGUAGAUCAUUGUGAUGAUGAGCCAACGGAAUGAUAUAAGUUCACUGGCACUCGAGAAGCUCCAGCGACAAAUGUCCAUGCUAUAAGCGAA-- ((..((.((..((((..(((((((........(((((.....)))))((((...((((.......))))..))))...............)))))))..))))..)).))..))...-- ( -30.30, z-score = -0.61, R) >droPer1.super_9 2975828 117 + 3637205 GCAGAUCGUUAGGAUUAUUGUCGCAACGUAGAUCAUUGUGAUGAUGAGCCAACGGAAUGAUAUAAGUUCACUGGCACUCGAGAAGCUCCAGCGACAAAUGUCCAUGCUAUAAGCGAA-- ((..((.((..((((..(((((((........(((((.....)))))((((...((((.......))))..))))...............)))))))..))))..)).))..))...-- ( -30.30, z-score = -0.61, R) >droWil1.scaffold_180698 1255482 119 + 11422946 GCAUAUGGUGAGUAUUAUUGUCGCUAUGUAGAUCAUUGUGAUGAUGAGCCAACGAAAUGAUAUCAGUUCGCUGGCAUUUGAAAAGCUCCAACGACAAAUGUCCAUGCUGUAAGGGUAAA ((((...(.((((.((((..((((.(((.....))).))))..))))((((.((((.((....)).)))).)))).........)))))...(((....))).))))............ ( -32.70, z-score = -1.52, R) >droVir3.scaffold_13049 18278880 117 + 25233164 GCAUAUGGUUAGGAUUAUUGUUGCAAUAUAGAGCAUUGUGAUGAUAAGCCAGCGAAAAGAUAUUAAUUCGCUGGCAUUCGAGAAGCUCCAGCGACAAAUGUCCAUGCUGGAA-AUGAA- ((............((((..(..((((.......))))..)..))))(((((((((..........))))))))).........))(((((((((....)))...)))))).-.....- ( -37.70, z-score = -3.41, R) >droMoj3.scaffold_6680 19059229 118 + 24764193 GCAUAUAGUCAGGAUUAUUGUUGCGAAGUACAGCAUUGUGAUGAUCAGCCAUCGGAAUGAUAUUAGCUCGCUGGCAUUCGAGAAGCUCCAGCGACAUAUGUCCAUGCUGAAAUAUAGA- .....((((..((((...(((((((((...(((((((.(((((......))))).)))((.......))))))...)))(((...)))..))))))...))))..)))).........- ( -30.90, z-score = -0.04, R) >droGri2.scaffold_15110 15200477 117 - 24565398 GCAUAUUGUUAGGAUUAUGGUUGCAAUAUAUAACAUUGUGAUGAUUAGCCAACGAAACGAUAUUAAUUCACUGGCAUUUGAGAAGCUCCAACGACAAAUGUCCAUGCUAAAA-AUAAA- ((((.(((((.((...((.((..((((.......))))..)).))...))))))).................((((((((..............)))))))).)))).....-.....- ( -22.24, z-score = -0.61, R) >anoGam1.chr3L 6251830 107 - 41284009 CGACAGACUCAGUAUGAUCGUCAUCACGUAGAUCAUGAUGAUGAAGAUCGAACGGAACGAGAU------------GUUCGUAUCGCCCCCGUACGCAAUGUCCAUUCUACAAAAGUAAA .((((......(((((.(((((((((.(.....).))))))))).(((((((((........)------------))))).))).....)))))....))))................. ( -28.20, z-score = -1.39, R) >consensus GCAGAUGGUUAGGAUUAUUGUCGCCACAUAGAUCAUGGUGAUGAUGAGCCAACGAAACGAGAUCAGUUCGCUGGCAUUCGAGAAGCUCCAGCGACAAAUGUCCAUGCUACAAAAUAAA_ ...........(((((((((((((((.........))))))))))))((((..(((..........)))..))))...........)))...(((....)))................. (-16.58 = -16.98 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:39:02 2011