| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,082,345 – 20,082,421 |
| Length | 76 |
| Max. P | 0.965187 |
| Location | 20,082,345 – 20,082,421 |
|---|---|
| Length | 76 |
| Sequences | 6 |
| Columns | 76 |
| Reading direction | reverse |
| Mean pairwise identity | 67.63 |
| Shannon entropy | 0.63519 |
| G+C content | 0.50420 |
| Mean single sequence MFE | -17.57 |
| Consensus MFE | -9.18 |
| Energy contribution | -10.40 |
| Covariance contribution | 1.22 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.965187 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20082345 76 - 24543557 UCCUCUUACCGAAUUCCGCGGUUUACGGCUCAUUUCAGGGCGCAAACUGUCAUCCACUCAGCUCUGCUCGGCUUGC ........((((.....(((((((.((.(((......))))).)))))))..........((...))))))..... ( -14.40, z-score = 0.81, R) >droGri2.scaffold_15110 15191107 65 + 24565398 --------UUAGAUU---CAGUUGAAGUAUUCUUUUGAGCCACAUGUAAUUCAUGUAAGAGUUUUACUAGAAUAGA --------.....((---(....))).((((((...((((((((((.....)))))..).))))....)))))).. ( -9.70, z-score = -0.39, R) >droSim1.chr3L 19376661 76 - 22553184 UCCUCUUACCGAAUUCCGCGGUUUACGGCUCAUUUCAGGGCGUAAACUGCCAUCCACUCAGCUUUGCUCGGCUUGC ........((((.....((((((((((.(((......)))))))))))))..........((...))))))..... ( -21.10, z-score = -1.66, R) >droSec1.super_97 74505 76 - 93343 UCCUCUUACCGAAUUCCGCGGUUUACGGCUCAUUUCAGGGCGUAAACUGCCAUCCACUCAGCUCUGCUCGGCUUGC ........((((.....((((((((((.(((......)))))))))))))..........((...))))))..... ( -21.10, z-score = -1.64, R) >droYak2.chr3L 3716671 67 + 24197627 UCCCUUUACCGAAUUCCGCGGUUUACGUCUCAUCUCGAGGCGUAAACUGCCAUCCACUCAUCUGUGC--------- .................((((((((((((((.....))))))))))))))....(((......))).--------- ( -23.90, z-score = -5.78, R) >droEre2.scaffold_4784 19820600 76 - 25762168 UCCCCUUGCCGAAUUCCGCGGUUUACGGCUCAUUUCAGGGAGUAAACUGCCACCCACUCAUCUGUUCACCGCCUGC .................(((((..((((.........((.((....)).))..........))))..))))).... ( -15.21, z-score = 0.26, R) >consensus UCCUCUUACCGAAUUCCGCGGUUUACGGCUCAUUUCAGGGCGUAAACUGCCAUCCACUCAGCUCUGCUCGGCUUGC .................((((((((((.(((......))))))))))))).......................... ( -9.18 = -10.40 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:39:00 2011