| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,044,534 – 20,044,635 |
| Length | 101 |
| Max. P | 0.761817 |
| Location | 20,044,534 – 20,044,635 |
|---|---|
| Length | 101 |
| Sequences | 9 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 70.12 |
| Shannon entropy | 0.61468 |
| G+C content | 0.48407 |
| Mean single sequence MFE | -35.69 |
| Consensus MFE | -8.69 |
| Energy contribution | -9.76 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.43 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.24 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.761817 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20044534 101 - 24543557 ---AAUGAAAUCGGACAGCAGUG-G---GUGAGUGCGAAAAGGU------CAGUGGUCAAUGGCAGUUUCUGAUAUUGAUUGCAUUUUGCACUUGCGGGCACUGGCUGUCACUC ---..........((((((((((-.---(..(((((((((....------..(..(((((((.(((...))).)))))))..).)))))))))..)...)))).)))))).... ( -38.90, z-score = -3.50, R) >droSim1.chr3L 19337097 95 - 22553184 ---AAUGAAAUCGGACAGCAGUG-G---GUGAGUGCGAAAAGGG------CAGUGGUCAAUGGCAGUUUCUGAUAUUGAUUGCAUUUUGCACUUGCG------GGCUGUCACUC ---..........((((((....-.---(..(((((((((...(------((...(((((((.(((...))).)))))))))).)))))))))..).------.)))))).... ( -34.80, z-score = -3.14, R) >droSec1.super_97 37154 101 - 93343 ---AAUGAAAUCGGACAGCAGUG-G---GUGAGUGCGAAAAGGG------CAGUGGUCAAUGGCAGUUUCUGAUAUUGAUUGCAUUUUGCACUUGCGGGCACUCGCUGUCACUC ---..........((((((((((-.---(..(((((((((...(------((...(((((((.(((...))).)))))))))).)))))))))..)...)))).)))))).... ( -39.40, z-score = -3.48, R) >droYak2.chr3L_random 973808 101 - 4797643 ---AAUGAACACGGACAGCAGUG-G---GUAAGUGCGAAAAGGG------CAAUGGUCAAUGGCAGUUUCUGAUAUUGAUUGCAUUUUGCACUUGCGGGCACUGGCUGUCACUA ---..........((((((((((-.---((((((((((((...(------((...(((((((.(((...))).)))))))))).))))))))))))...)))).)))))).... ( -39.90, z-score = -4.24, R) >droEre2.scaffold_4784 19784116 108 - 25762168 ---AAUGAACAUGGACAGCAGUGGG---UAAGUGGUAAGUGCGAAAAGGGGACUGGUCAAUGGCAGUUUCUGAUAUUGAUUGCAUUUUGCACUUGCGGGCACUGGCUGUCACUC ---..........((((((((((.(---((((((..((((((....((....))((((((((.(((...))).))))))))))))))..)))))))...)))).)))))).... ( -39.90, z-score = -3.69, R) >droAna3.scaffold_13337 18206978 101 + 23293914 ---AAUGAACACGGACAGCAUUGAA---AAAGUACCAAAAUGG-------CAUUGGCCAAUGUCACUUUUUGAUAUUGAUUGCAUUUUGCGGGGUCUGCCACAAGCUGUCAAUC ---..........((((((.((...---.)).........(((-------((..(((((((((((.....)))))))..((((.....)))))))))))))...)))))).... ( -28.40, z-score = -1.55, R) >dp4.chrXR_group6 4621361 108 - 13314419 ---AAUGAACAAGGACAGCUGCGAG---GCAGCUGCAAGACGGACGUGGCCAAUGGGUUGUGGCAGCUUGUGAUACUGAUUGCAUUUUGCACCUGCGGGCACAAACUGUCAGUC ---..........(.(((((((...---))))))))..(((((...(((((..(((((....((((..((..((....))..))..)))))))))..))).))..))))).... ( -36.40, z-score = -0.42, R) >droPer1.super_9 2921857 108 - 3637205 ---AAUGAACAAGGACAGCUGCGAG---GCAGCUGCAAGACGGACGUGGCCAAUGGGUUGUGGCAGCUUGUGAUACUGAUUGCAUUUUGCACCUGCGGGCACAAACUGUCAGUC ---..........(.(((((((...---))))))))..(((((...(((((..(((((....((((..((..((....))..))..)))))))))..))).))..))))).... ( -36.40, z-score = -0.42, R) >droWil1.scaffold_180698 1194074 101 - 11422946 CCAAAUUAACUGAGACAGCAGGGAGCAAGCGUUUACCAGCUGAGU-CAGAAAGUGACCCAUGACAGUUCAUGAUAUUGAUGCCAACUGUCAC------------AAUGUCAAUC .........((((..((((.((((((....)))).)).))))..)-)))....((((...(((((((((((.......)))..)))))))).------------...))))... ( -27.10, z-score = -1.91, R) >consensus ___AAUGAACACGGACAGCAGUG_G___GUAAGUGCAAAAAGGG______CAGUGGUCAAUGGCAGUUUCUGAUAUUGAUUGCAUUUUGCACUUGCGGGCACUGGCUGUCACUC .............(((((...........(((.(((((((..........((........))((((((.........)))))).))))))).)))..........))))).... ( -8.69 = -9.76 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:38:57 2011