| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,034,762 – 20,034,860 |
| Length | 98 |
| Max. P | 0.500000 |
| Location | 20,034,762 – 20,034,860 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 81.29 |
| Shannon entropy | 0.26404 |
| G+C content | 0.31685 |
| Mean single sequence MFE | -18.20 |
| Consensus MFE | -11.25 |
| Energy contribution | -13.03 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3L 20034762 98 + 24543557 UCUUGAAAUGGGAUACAGCUUCUAAUUAAAGGGGAUGGUUCUAGUUUAAAGUAAAAAUCGUACGUUUUUAUAAAACGUACUCUAGUCAAUAUGGAAAC ..(((((.((((((....(((((......)))))...)))))).)))))..........((((((((.....))))))))((((.......))))... ( -19.60, z-score = -1.86, R) >droSim1.chr3L 19327525 98 + 22553184 UCUUGAAAUGGGAUAGAGCUUCUAAUUAAAGGGGAUGGUUCUAGUUUCAAGUAAAAAUCAUACGUUUUCAUAAAACGUACUCUUGUCAAUGUGAAAAC .(((((((((((((....(((((......)))))...)))))).)))))))............(((((((((..(((......)))...))))))))) ( -22.40, z-score = -2.58, R) >droSec1.super_97 27647 78 + 93343 UCUUGAAAU-----------UCUAAUUAAUGGGGAUGGUUCUAGUUUCAAGUAAAAAUCAUACGUUUUCAUAAAACGUGCUCUUGUCAA--------- .((((((((-----------(..(((((.......)))))..))))))))).........(((((((.....)))))))..........--------- ( -12.60, z-score = -1.45, R) >consensus UCUUGAAAUGGGAUA_AGCUUCUAAUUAAAGGGGAUGGUUCUAGUUUCAAGUAAAAAUCAUACGUUUUCAUAAAACGUACUCUUGUCAAU_UG_AAAC .((((((((.(((.....((((........)))).....))).)))))))).........(((((((.....)))))))................... (-11.25 = -13.03 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:38:54 2011