| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,032,610 – 20,032,704 |
| Length | 94 |
| Max. P | 0.500000 |
| Location | 20,032,610 – 20,032,704 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 75.41 |
| Shannon entropy | 0.37921 |
| G+C content | 0.57508 |
| Mean single sequence MFE | -34.41 |
| Consensus MFE | -18.00 |
| Energy contribution | -19.50 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3L 20032610 94 + 24543557 GGGAAUGGGGCUGGAUCUGGACAUGGUUCCGGAUCUGGAUACCC-UAGUUGGUUUUGCGUUGGGGCGUCGAUUCUGACCAGUUGCCUG-UUGCCAC ((.((((((.(..((((((((......))))))))..).....(-(.((..(..((((((....))).)))..)..)).))...))))-)).)).. ( -35.50, z-score = -1.40, R) >droSim1.chr3L 19325792 84 + 22553184 CGGAAUGGGGCUGGAUCUGGACCUGGUUCCGGAUCCGGAGACCC-UAGUUGU-----------GGCGUCGAUUCUGACCAGUUGCCUGGUUGCCAC ......(((.(((((((((((......)))))))))))...)))-.....((-----------((((......).((((((....))))))))))) ( -36.50, z-score = -2.16, R) >droSec1.super_97 25954 84 + 93343 CGGAAUGGGGCUGGAUCUGGACCUGGUUCCGGAUCCGGAGACCC-UAGUUGU-----------GGCGUCGAUUCUGACCAGUUGCCUGGUUGCCAC ......(((.(((((((((((......)))))))))))...)))-.....((-----------((((......).((((((....))))))))))) ( -36.50, z-score = -2.16, R) >droAna3.scaffold_13337 18193228 90 - 23293914 -GGAAUGGGUAUGGAUAUGGGUAUGGGAAUGGGACUGGAUCUGUAUAGUUCGGUCUG----GGGUGGGGGAUUCUGUCCAUUUGCCUG-UUGCCAC -((((((((((((((((.((((.......(.(((((((((.......))))))))).----)........)))))))))))..)))))-)).)).. ( -29.16, z-score = -1.49, R) >consensus CGGAAUGGGGCUGGAUCUGGACAUGGUUCCGGAUCCGGAGACCC_UAGUUGG___________GGCGUCGAUUCUGACCAGUUGCCUG_UUGCCAC .((...(((.(((((((((((......)))))))))))...)))...............................((((((....)))))).)).. (-18.00 = -19.50 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:38:53 2011