| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,998,564 – 19,998,673 |
| Length | 109 |
| Max. P | 0.519719 |
| Location | 19,998,564 – 19,998,673 |
|---|---|
| Length | 109 |
| Sequences | 7 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 68.46 |
| Shannon entropy | 0.61345 |
| G+C content | 0.33444 |
| Mean single sequence MFE | -20.82 |
| Consensus MFE | -7.92 |
| Energy contribution | -8.54 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.519719 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 19998564 109 - 24543557 CUGUUACACUUAUAUGUAAAGCAAUAUUAUCGUGGACUAUUGGUCAACUCGGACGUAUUUGUGGCACACAACACGAAUACGUACAUAUUUCUGCAUUUUACAGAUAAAC--------- .........((((.(((((((((......(((..(((.....)))....)))(((((((((((........))))))))))).........)))..)))))).))))..--------- ( -26.00, z-score = -2.53, R) >droSim1.chr3L 19282719 109 - 22553184 CUGUUACACUUAUUUGUAAAGCAAUAUUAUUGGGGACUACUGCUCGACUCGGACGUAUUUGUGGCACACAGCACGAAUACGUACAUAUUUCUGCAUUUUACAGAUAAAC--------- .........((((((((((((((......(((((........)))))...(.(((((((((((........))))))))))).).......)))..)))))))))))..--------- ( -27.20, z-score = -3.27, R) >droSec1.super_29 644067 109 - 700605 CUGUUACACUUAUUUGUAAAGCAAUAUUAUUGUGGACUACUGGUCGACUCGGACGUAUUUGUGGCACACAGCACGUAUACGUACAUAUUUCUGCAUUUUACAGAUAAAC--------- .........((((((((((((((........((.(((.....))).))..(.((((((.((((........)))).)))))).).......)))..)))))))))))..--------- ( -26.10, z-score = -1.81, R) >droEre2.scaffold_4784 19737994 109 - 25762168 CUGUUACACUUAUUUAUAAAGCAAUAUUAAUAUGGAUUACUAGUCGACUCGAACGUAGUUGUGACACACAUCUCGAAUACGUACAUAUUUCUGCAUUUUACAGAUAAAC--------- .........((((((.(((((((.....(((((((((.....))).......(((((.(((.((......)).))).))))).))))))..)))..)))).))))))..--------- ( -16.00, z-score = 0.16, R) >droYak2.chr3L 3627494 109 + 24197627 CUGUUACACUUAUUUAUAAAGCAAUAUUAAUAUGGAUUACUGGCCGACUCGAACGUAUUUGUGACACACAACACUAAUACGUACAUAUUUCUGCAUUUUGCAGAUAAAC--------- ..(((.((...(((((((............)))))))...))...)))..(.(((((((.(((........))).))))))).).....(((((.....))))).....--------- ( -17.90, z-score = -1.15, R) >droAna3.scaffold_13337 18158580 107 + 23293914 ACUUUCCACUAAUUUUCAAAAUAUUUCUAUUAAAGGUAAGCCAUUUAUUAAAUCGCAUUGGCAGUACAC--UAUAGGUACGUACAUAUUUUGGGGUUUUAAACAUAAUC--------- .............(..((((((((...............((((...............)))).((((.(--....)))))....))))))))..)..............--------- ( -15.46, z-score = -1.05, R) >droPer1.super_88 198622 114 + 213009 CGUCCACAUAGAUUUUUAAAAUUAUUUCUGUA-GUAUUAGAGCACUAUAUAUGCAUGUAUGUA-CAUAUCUCA-GAGCUUGUACG-AUUUUGUGUUAUUAUUAGUAACCAAAAAAAAC .......(((((..(........)..))))).-((((..((((.((((((.((((....))))-.))))...)-).)))))))).-.(((((.(((((.....))))))))))..... ( -17.10, z-score = 0.17, R) >consensus CUGUUACACUUAUUUGUAAAGCAAUAUUAUUAUGGAUUACUGGUCGACUCGAACGUAUUUGUGGCACACAACACGAAUACGUACAUAUUUCUGCAUUUUACAGAUAAAC_________ ....................................................(((((((((((........))))))))))).......((((.......)))).............. ( -7.92 = -8.54 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:38:52 2011