| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,784,821 – 5,784,920 |
| Length | 99 |
| Max. P | 0.763416 |
| Location | 5,784,821 – 5,784,920 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 89.99 |
| Shannon entropy | 0.17331 |
| G+C content | 0.29823 |
| Mean single sequence MFE | -20.74 |
| Consensus MFE | -15.96 |
| Energy contribution | -16.96 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.763416 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5784821 99 + 23011544 AUUAUAGUUCAAUUACUCAGUGCUUUCAGUUUAUCCACCUGAUUAUUCAUUAAAGUAUAUUGCUUUAUAGUUACUUGGCGCAUUUGGUAUUGAACUUCG .....((((((((.(((.(((((..((((.........))))........((((((.....))))))............))))).)))))))))))... ( -20.40, z-score = -2.57, R) >droEre2.scaffold_4929 5876870 98 + 26641161 UUUGGAGUUCAAUUACUCAGUGCUUUCAGUUCAUCCAACAAAAUAUUUAUUAAAGUAUAUUGGUU-AUAGUUACUUAGCGCAUUUGGUAUUGAACUUGA ....(((((((((.(((.(((((...............(((.((((((....)))))).)))(((-(........))))))))).)))))))))))).. ( -23.00, z-score = -2.86, R) >droYak2.chr2L 8918192 98 - 22324452 UUUGGAGUUCAAUUACUCAGUGCUUUCAGUUCAUCCAGCUAAUUAUUUAUUAAAGUAUAUCGGUU-AUAGUUACUUGGCGUAUUUGGUAUUGAACUUGG ....(((((((((.(((.(((((.(..(((......(((..(((((((....))))).))..)))-......)))..).))))).)))))))))))).. ( -19.50, z-score = -1.37, R) >droSec1.super_5 3863526 99 + 5866729 AUUAUAAUUCAAUUACCCAGUGCUUUCAGUUGAUCCAACUAAUUAUUCAUUAAAGUAUAUUGGUUUAUAGUUACUUGGUGCAUUUGGUAUUGAACUUGA .......((((((.(((.(((((..((....)).((((.(((((((..(((((......)))))..))))))).)))).))))).)))))))))..... ( -21.30, z-score = -2.01, R) >droSim1.chr2L 5581934 99 + 22036055 AUUAUAAUUCAAUUACUCAGUGCUUUCAGUUGAUCCAACUAAUUAUUCAUUAAAGUAUAUUGGUUUAUAGUUACUUGGUGCAUUUGGUAUUGAACUUGA .......((((((.(((.(((((..((....)).((((.(((((((..(((((......)))))..))))))).)))).))))).)))))))))..... ( -19.50, z-score = -1.55, R) >consensus AUUAUAGUUCAAUUACUCAGUGCUUUCAGUUCAUCCAACUAAUUAUUCAUUAAAGUAUAUUGGUUUAUAGUUACUUGGCGCAUUUGGUAUUGAACUUGA .....((((((((.(((.(((((...........((((.(((((((..(((((......)))))..))))))).)))).))))).)))))))))))... (-15.96 = -16.96 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:19:50 2011