| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,949,878 – 19,949,985 |
| Length | 107 |
| Max. P | 0.840185 |
| Location | 19,949,878 – 19,949,985 |
|---|---|
| Length | 107 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 82.52 |
| Shannon entropy | 0.37138 |
| G+C content | 0.34180 |
| Mean single sequence MFE | -18.89 |
| Consensus MFE | -12.05 |
| Energy contribution | -11.92 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.840185 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19949878 107 + 24543557 ---------CCCUUGCACCCCAUCCCUGCCGUAUUUAUAGCAUCUUAAUUGAAUUUCAAUUUUCAAUUUCGC-UUUUAAUUGAAUUCAAUGAAAAAGUGUCGAUGAGACGGUAUUCA ---------.................((((((........((((..(((((((........))))))).(((-((((.((((....))))..)))))))..))))..)))))).... ( -21.20, z-score = -2.43, R) >droSim1.chrX 5105343 107 - 17042790 ---------CCCUGGCACCCCAUCCCUGCCGUAUUUAUAGCAUCUUAAUUGAAUUUCAAUUUUCAAUUUCGC-UUUUAAUUGAAUUCAAUGAAAAAGUGUCGAUGAGACGGUAUUCA ---------...(((....)))....((((((........((((..(((((((........))))))).(((-((((.((((....))))..)))))))..))))..)))))).... ( -21.90, z-score = -1.94, R) >droSec1.super_29 594530 107 + 700605 ---------CCCUGUCACCCCAUCCCUGCCGUAUUUAUAGCAUCUUAAUUGAAUUUCAAUUUUCAAUUUCGC-UUUUAAUUGAAUUCAAUGAAAAAGUGUCGAUGAGACGGUAUUCA ---------.................((((((........((((..(((((((........))))))).(((-((((.((((....))))..)))))))..))))..)))))).... ( -21.20, z-score = -2.52, R) >droYak2.chr3L 3569661 107 - 24197627 ---------CCCUGUCACCCCAUCCCAGGCGUAUUUAUAGCAUCUUAAUUGAAUUUCAAUUUUCAAUUUCGC-UUUUAAUUGAAUUCAAUGAAAAAGUGUCGAUGAGACGGUAUUCA ---------..(((((((.((......)).))........((((..(((((((........))))))).(((-((((.((((....))))..)))))))..)))).)))))...... ( -22.80, z-score = -2.31, R) >droEre2.scaffold_4784 19688088 107 + 25762168 ---------CUCUGACACCCCAUCCCUGGCGUAUUUAUAGCAUCUUAAUUGAAUUUCAAUUUUCAAUUUCGC-UUUUAAUUGAAUUCAAUGAAAAAGUGUCGAUGAGACGGUAUUCA ---------..(((..((.(((....))).))........((((..(((((((........))))))).(((-((((.((((....))))..)))))))..))))...)))...... ( -18.40, z-score = -0.52, R) >droAna3.scaffold_13337 3972827 91 - 23293914 -------------------------CCCUCGUAUUUAUAGCAUCUUAAUUGAAUUUCAAUUUUCAAUUUCGC-UUUUAAUUGAAUUCAAUGAAAAAGUGUCGAUGAAACGGUAUUCA -------------------------.....(((((.....((((..(((((((........))))))).(((-((((.((((....))))..)))))))..))))....)))))... ( -15.60, z-score = -1.29, R) >dp4.chrXR_group6 1578175 116 - 13314419 CCCCCCCCUCUCUCGCUCUCUCUGCCCACUGUAUUUAUAGCAUCUUAAUUGAAUUUCAAUUUUCAAUUUUGC-UUUUAAUUGAAUUCAAUGAAAAAGUGUCGAUGAAUCGGCAUUCA ......................((((..((((....))))((((..(((((((........)))))))..((-((((.((((....))))..))))))...))))....)))).... ( -19.00, z-score = -1.99, R) >droPer1.super_20 212192 116 - 1872136 CCCUCCCCCCGCUCUCUCUCUCUGCCCACUGUAUUUAUAGCAUCUUAAUUGAAUUUCAAUUUUCAAUUUUGC-UUUUAAUUGAAUUCAAUGAAAAAGUGUCGAUGAAUCGGCAUUCA ......................((((..((((....))))((((..(((((((........)))))))..((-((((.((((....))))..))))))...))))....)))).... ( -19.00, z-score = -1.99, R) >droWil1.scaffold_180698 8520252 110 + 11422946 ------CCCCCCCCCCCCUUUGCCCCAUUCGUAUUUAUAGCAUCUUAAUUGAAUUUCAAUUUUCAAUUUCAC-UUUUAAUUGAAUUCAAUGAAAAAGUGUCGAUGAAAUGCUAUUCA ------..............................(((((((...(((((.....)))))((((....(((-((((.((((....))))..)))))))....)))))))))))... ( -18.30, z-score = -3.66, R) >droMoj3.scaffold_6680 7356783 100 - 24764193 -----------------GCUCACACCUAACGUAUUUAUGGCAUCUUAAUUGAAUUUCAAUUUUCAAUUUCGCCUUUUAAUUGAAUUCAAUGAAAAAGUGUCGAUGAAACGGUAUUCA -----------------............(((.(((((((((.(((.((((((((.(((((................)))))))))))))....))))))).))))))))....... ( -16.79, z-score = -1.00, R) >droVir3.scaffold_13049 2443820 100 - 25233164 -----------------GCUCACACCUAACGUAUUUAUGGCAUCUUAAUUGAAUUUCAAUUUUCAAUUUCGCCUUUUAAUUGAAUUCAAUGAAAAAGUGUCGAUGAAACGGUAUUCA -----------------............(((.(((((((((.(((.((((((((.(((((................)))))))))))))....))))))).))))))))....... ( -16.79, z-score = -1.00, R) >droGri2.scaffold_15110 20747005 96 + 24565398 -----------------GCUCACACCACCCAUAUUUACAGCAUCUUAAUUGAAUUUCAAUUUUCAAUUUCGCCUUUUAAUUGAAUUCAAUGAAAAAGUGUCGAGGAAGUGUCA---- -----------------....((((..((.................(((((((........)))))))(((((((((.((((....))))..))))).).)))))..))))..---- ( -15.70, z-score = -1.06, R) >consensus _________CCCU__CACCCCAUCCCUGCCGUAUUUAUAGCAUCUUAAUUGAAUUUCAAUUUUCAAUUUCGC_UUUUAAUUGAAUUCAAUGAAAAAGUGUCGAUGAAACGGUAUUCA ........................................((((..(((((((........))))))).(((.((((.((((....)))).)))).)))..))))............ (-12.05 = -11.92 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:38:49 2011