Locus 8067

Sequence ID dm3.chr3L
Location 19,945,391 – 19,945,497
Length 106
Max. P 0.770582
window11101

overview

Window 1

Location 19,945,391 – 19,945,497
Length 106
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 81.64
Shannon entropy 0.35449
G+C content 0.43432
Mean single sequence MFE -24.51
Consensus MFE -16.98
Energy contribution -18.18
Covariance contribution 1.20
Combinations/Pair 1.31
Mean z-score -1.60
Structure conservation index 0.69
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.64
SVM RNA-class probability 0.770582
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 19945391 106 + 24543557
GUAUCGCAAUAAUCGGAGCUUUUAUCGAACAGAAGCCUUCCGAUGAGAGCUGAACAUCCCGAUGUCGGCGACCAAAAGCAGCAAUAGUUUUUAACUUCCCCUAUUA
...((((....((((((((((((((((...((....))..))))))))))).......)))))....))))..((((((.......)))))).............. ( -26.41, z-score =  -2.17, R)
>droSim1.chrX 5100984 106 - 17042790
GUAUCGCAAUAAUCGGAGCUUUUAUCGAACAAAAGCCUUCCGAUGACAGCUGAACAUCCCGAUUUCGGCGACCAAAAGCAGCAAUAGUUUUUAACUUCACCUAUUA
...((((...((((((((((.((((((.............)))))).)))).......))))))...))))..((((((.......)))))).............. ( -23.33, z-score =  -2.14, R)
>droSec1.super_29 590135 106 + 700605
GUAUCGCAAUAAUCGGAGCUUUUAUCGAACAAAAGCCUUCCGAUGACAGCUGAACAUCCCGAUUUCGGCGACCAAAAGCAGCAAUAGUUUUUAACUUCACCUAUUA
...((((...((((((((((.((((((.............)))))).)))).......))))))...))))..((((((.......)))))).............. ( -23.33, z-score =  -2.14, R)
>droYak2.chr3L 3565037 106 - 24197627
GUAUCGCAAUAAUCGGAGCUUUUAUCGAACAGAUGCCUUCCGAUGAGAGCUGAACAUCCCCAAUUCGGCGACCAAAAGCAGCAAUAGUUCUUGACUUCACCUGUUA
...((((...(((.(((((((((((((...((....))..)))))))))))........)).)))..)))).....(((((....((((...))))....))))). ( -23.20, z-score =  -0.80, R)
>droEre2.scaffold_4784 19683463 106 + 25762168
GUAUCGCAAUAAUCGGAGCUUUUAUCGAACAGAUUCCUUCCGAUGAGAGCUGAACAUCCCGAUGUCGGCGACCAAAAGCAACAAUAGUUUUCUACUUCUCCUGUAA
...((((....((((((((((((((((...((....))..))))))))))).......)))))....))))......(((.....(((.....))).....))).. ( -25.91, z-score =  -1.86, R)
>droAna3.scaffold_13337 3969084 101 - 23293914
GCAUUGCAGU--UCGAAGCGUUGGUAAUACAAUGGUCCU---AUCAACAUGGUACAUCCUAAUGUCGGAGACCAGAAGCAGCAGAAGUGCCUUAUGGAUCCUAAUA
.(((.(((.(--((...(((((((((..((....))..)---)))))).((((...(((.......))).))))......)).))).)))...))).......... ( -24.90, z-score =  -0.50, R)
>consensus
GUAUCGCAAUAAUCGGAGCUUUUAUCGAACAAAAGCCUUCCGAUGAGAGCUGAACAUCCCGAUGUCGGCGACCAAAAGCAGCAAUAGUUUUUAACUUCACCUAUUA
...((((....((((((((((((((((.............))))))))))).......)))))....))))..((((((.......)))))).............. (-16.98 = -18.18 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:38:47 2011