| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,935,157 – 19,935,248 |
| Length | 91 |
| Max. P | 0.833457 |
| Location | 19,935,157 – 19,935,248 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 81.07 |
| Shannon entropy | 0.36467 |
| G+C content | 0.29166 |
| Mean single sequence MFE | -15.47 |
| Consensus MFE | -9.89 |
| Energy contribution | -9.71 |
| Covariance contribution | -0.18 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.833457 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19935157 91 - 24543557 CGAGCGACG--GACAUGAGCACAUGUGUUGAAAAUUUAACAGAAAUGUGCAAAUUUAAUUAAAUUCAAACGAGAAAUAAAUAUAAAUAAGCUU---------- .((((....--.......((((((.((((((....))))))...)))))).............(((......)))..............))))---------- ( -15.90, z-score = -1.96, R) >droSim1.chrX 5089737 91 + 17042790 CGAGCGACG--GACAUGGGCACAUGUGUUGAAAAUUUAACAGAAAUGUGCAAAUUUAAUUAAAUUCAAACGAGAAAUAAAUAUAAAUAAGCUU---------- .((((....--.......((((((.((((((....))))))...)))))).............(((......)))..............))))---------- ( -15.70, z-score = -1.85, R) >droSec1.super_29 580090 91 - 700605 CGAGCGACG--GACAUGGGCACAUGUGUUGAAAAUUUAACAGAAAUGUGCAAAUUUAAUUAAAUUCAAACGAGAAAUAAAUAUAAAUAAGCUU---------- .((((....--.......((((((.((((((....))))))...)))))).............(((......)))..............))))---------- ( -15.70, z-score = -1.85, R) >droYak2.chr3L 3555222 90 + 24197627 CGGGAGACG--GACA-GAGCACAUGUGUUGAAAAUUUAACAGAAAUGUGCAAAUUUAAUUAAAUUCAAACGAGAAAUAAAUAUAAAUAAGCUU---------- (.(....).--)...-..((((((.((((((....))))))...))))))...........................................---------- ( -14.30, z-score = -2.05, R) >droEre2.scaffold_4784 19673748 90 - 25762168 CGGCAGACG--GACA-GAGCACAUGUGUUGAAAAUUUAACAUAAAUGUGCAAAUUUAAUUAAAUUCAAACGAGAAAUAAAUAUAAAUAAGCCU---------- .(((.....--....-..(((((((((((((....)))))))..)))))).............(((......)))..............))).---------- ( -18.10, z-score = -3.25, R) >droAna3.scaffold_13337 3961992 83 + 23293914 ------------CGAGAGGCACAUGUGGUGAAAAUUUAACACAAAUGUGCAAAUUUAAUUAAAUUCAAACGAGAAAUAAAUAUAAAUAUACGCUU-------- ------------.(((.(((((((...(((.........)))..)))))).............(((......)))...............).)))-------- ( -11.30, z-score = -1.04, R) >droWil1.scaffold_180698 2881814 103 + 11422946 CAACAUAUGUUUGCGUGUGUGUGUGUGUCUGAAAUUUAACACAAAUGUGCAAAUUUAAUUAAAUUCAAACGAGAAAGAAAUAUAUACAUAUAAAAAAAAACUU .........(((..((((((((((((.(((.((((((..(((....))).)))))).......(((......)))))).))))))))))))..)))....... ( -17.30, z-score = -0.81, R) >consensus CGAGAGACG__GACAUGAGCACAUGUGUUGAAAAUUUAACAGAAAUGUGCAAAUUUAAUUAAAUUCAAACGAGAAAUAAAUAUAAAUAAGCUU__________ ..................((((((.((((((....))))))...))))))..................................................... ( -9.89 = -9.71 + -0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:38:46 2011