| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,927,953 – 19,928,050 |
| Length | 97 |
| Max. P | 0.654485 |
| Location | 19,927,953 – 19,928,050 |
|---|---|
| Length | 97 |
| Sequences | 7 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 72.78 |
| Shannon entropy | 0.53181 |
| G+C content | 0.46754 |
| Mean single sequence MFE | -25.20 |
| Consensus MFE | -13.33 |
| Energy contribution | -14.93 |
| Covariance contribution | 1.60 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.654485 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19927953 97 + 24543557 CAACAAAGAUUUG-GCAACUUUUCGGUUUCUGCUGGCCUCUAAUUUCAUAUGCGGGUCAGCACACGGAGCAACGUGCGAAACUUUCAUCCUGUUCCCA-------- .((((..((...(-....)...))(((((((((((((((.((........)).)))))))))((((......)))).)))))).......))))....-------- ( -26.30, z-score = -1.62, R) >droGri2.scaffold_15110 20726528 73 + 24565398 -----------------UUCCAAAGAUUUGUGCGUGAGCUUCAUUUUGUAUGCGGA--GGCGCA--AGUGAACGUGCAAAAGUUUUAGGCAAUU------------ -----------------..((.((((((((..(((..(((((.(((((....))))--)..).)--)))..)))..)))..))))).)).....------------ ( -18.00, z-score = -0.39, R) >droAna3.scaffold_13337 3956521 97 - 23293914 UACCAAAGAUUUCUGAAACUUUUUGGUUUGUGCUGGUCUUCUAUUUUGUAUGCGGGUCAGCACA-GGAACAACGUGCAAAAGUUUCCACCCAUCUCCU-------- .((((((((..........)))))))).(((((((..((.(..........).))..)))))))-((((..((........))))))...........-------- ( -23.50, z-score = -1.00, R) >droEre2.scaffold_4784 19666770 105 + 25762168 CAACAAAGAUUUG-GCAACUUUUCGGUUUCUGCUGGCCUCUAAUUUGGUAUGCGGGUCAGCACACCGAGCAACGUGCGAAACUUAUAUCCUUCUAUCCUGCACUCU .....(((.(((.-(((....((((((...(((((((((.((........)).))))))))).)))))).....))).))))))...................... ( -26.90, z-score = -1.50, R) >droYak2.chr3L 3548020 97 - 24197627 CAACAAAGAUUUG-GCAACUUUUUGGUUUCUGCUGGCCUCUGAUUUGGUAUGCGGGUCAGCACACGGAGCAACGUGCGAAACUUCUAUCCUGCUCUCU-------- ......(((...(-(((.......(((((((((((((((..............)))))))))((((......)))).)))))).......)))).)))-------- ( -26.68, z-score = -0.91, R) >droSec1.super_29 572415 97 + 700605 CAACAAAGAUUUG-GCAACUUUUCGGUUUCUGCUGGCCUCUAAUUUCGUAUGCGGGUCAGCACACGGAGCAACGUGCGAAACUUUCAUCCUGCUCCCA-------- ............(-(((.......(((((((((((((((.((........)).)))))))))((((......)))).)))))).......))))....-------- ( -26.34, z-score = -1.15, R) >droSim1.chr3L 19224381 97 + 22553184 CAGCAAAGAUUUG-GCAACUUUUCGGUUUCUGCUGGCCUCUAAUUUCGUAUGCGGGUCAGCACACGGAGCAACGUGCGAAACUUUCAUCCUGCUCCCA-------- .((((..((...(-....)...))(((((((((((((((.((........)).)))))))))((((......)))).)))))).......))))....-------- ( -28.70, z-score = -1.40, R) >consensus CAACAAAGAUUUG_GCAACUUUUCGGUUUCUGCUGGCCUCUAAUUUCGUAUGCGGGUCAGCACACGGAGCAACGUGCGAAACUUUCAUCCUGCUCCCA________ ........................(((((((((((((((.((........)).)))))))))((((......)))).))))))....................... (-13.33 = -14.93 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:38:45 2011