| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,919,219 – 19,919,374 |
| Length | 155 |
| Max. P | 0.801296 |
| Location | 19,919,219 – 19,919,374 |
|---|---|
| Length | 155 |
| Sequences | 12 |
| Columns | 173 |
| Reading direction | forward |
| Mean pairwise identity | 59.09 |
| Shannon entropy | 0.92047 |
| G+C content | 0.60486 |
| Mean single sequence MFE | -63.50 |
| Consensus MFE | -9.47 |
| Energy contribution | -8.29 |
| Covariance contribution | -1.19 |
| Combinations/Pair | 1.94 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.15 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.801296 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19919219 155 + 24543557 AGUGACCAGCAGUUCCGCUGCUGUUCCUGCUGCUGCCGCCGCGGAGUCCACUGCUCCGCUGUUAACUGCCGGAGGAGCUGCUCCGGCGG------GUGCACAAGUAGCACA------------AGUAGUCUCACCAACGUUGCCUUACAUACCGCCGCUGGCCAACACCUUUG .((((.((((((.....))))))...((((((((((....(((((((.....)))))))(((...(((((((((......)))))))))------..)))...)))))...------------)))))..))))....((((((...............)).))))....... ( -59.86, z-score = -0.95, R) >droVir3.scaffold_13049 22828350 146 + 25233164 ------------------------UUCGCCGUCCCCAUCAGCUGGGGCGGCUGCGGCGGUACCGGUUG--GUCCGGCUAAU-CCCGUGACGACGCCUGUCGUUGCGGCCGCAGCGGCCAGUGCCGUUGUUGCACCAACAUUGCCUUAUAUACCGCCACUGGCCAACACAUUUG ------------------------.....((.(((((.....)))))))((((((((((..((((...--..)))).....-))((..(((((....)))))..))))))))))((((((((.((.(((.(((.......))).....))).)).)))))))).......... ( -67.70, z-score = -2.52, R) >droMoj3.scaffold_6680 17445186 143 + 24764193 ---------------------UGCCCCGGCUCCUUCAACGGCACCUGCUGCCGCAGCUACACCCAGUG--GCCAAUCGAAU-CCUGUUACGCCGCCUGUGGUAGCUACCAA------CAGUGCUGUUGUCGCACCAACGUUGCCUUAUAUACCGCCGCUGGCAAACACAUUUG ---------------------((((.((((.....(((((((((..((((((((((.........(((--((....((...-..))....)))))))))))))))......------..)))))))))..(((.......)))..........))))..)))).......... ( -47.00, z-score = -1.81, R) >droGri2.scaffold_15110 18104779 167 + 24565398 ---AGCGACGGCGCCACCAGCAACGGCAACAUCCUCGUCAACAUCAACAUCCGUGGCAACAUCAAAUAAUGCCGUUGCAAC-GUCGUUGC-CCGUCGGUCA-GACGGCGGCAGCGAAUGCAGCUGUUGUUGCACCCACAUUGCCUUAUAUACCGCCGCUAGCAAAUACAUUUG ---.((..(((((......(((((((((........((........))....(((....))).......)))))))))...-.(((((((-(.((((....-..)))))))))))).((((((....))))))...................)))))...))........... ( -57.10, z-score = -2.12, R) >dp4.chrXR_group6 1544733 155 - 13314419 -CGUCCCAGC--CUCUUCGGCCUCGGUUGCUACUG---CAGCCGAGGCC---GCUCCAUUGCUGACGAGCGGAGGCGGA---CCGGCAC------CUGCCCCUGUGGCAGUUGCCGGCUCUGCUGUCGUCUCACCAACGUUGCCUUACAUACCGCCUCUGGCCAACACCUUUG -.....((((--.....(((((((((((((....)---)))))))))))---).......))))..(((((..((((((---((((((.------(((((.....))))).)))))).))))))..)).)))......((((((...............)).))))....... ( -75.76, z-score = -5.41, R) >droPer1.super_20 181116 155 - 1872136 -CGUCCCAGC--CUCUUCGGCCUCGGUUGCUACUG---CAGCUGAGGCC---GCUCCAUUGCUGACGAGCGGAGGCGGA---CCGGCAC------CUGCCCCUGUGGCAGUUGCCGGCUCUGCUGUCGUCUCACCAACGUUGCCUUACAUACCGCCUCUGGCCAACACCUUUG -.....((((--.....(((((((((((((....)---)))))))))))---).......))))..(((((..((((((---((((((.------(((((.....))))).)))))).))))))..)).)))......((((((...............)).))))....... ( -73.56, z-score = -4.85, R) >droAna3.scaffold_13337 3944578 167 - 23293914 GCUUGCCGGAGGUGCUGGGUCAGUUCCUGUUGCAU------CGGAGGCUUCUGUUCCGCUAUUAAGCGGAGGUGGGGCUGUUGCAGCUGGGGCUUCUGCCCCUGUGGCUGCUGCCGGAUCCGCUGUCGUCUCACCAACGUUGCCUUAUAUACCACCACUUGCAAACACUUUUG (.((((.((.(((((.(((......)))...))))------).(((((...(((((((((....))))))((((((((....(((((.(((((....)))))(.((((....)))).)...))))).)))))))).)))..)))))...........)).)))).)....... ( -66.50, z-score = -1.21, R) >droEre2.scaffold_4784 19657051 164 + 25762168 AGUCCCUAGUAGCUCUGCAGCUGCUCCUGCUUCUG---CCGUGGAGUCCUCUGCUCCGCUGCUGACUGCCGGGGGAGCGACUCCAGUUG------UUGCUCCAGCAGCUUAUGCAGGAUCCGCUGUGGUCUCACCAACGUUGCCUUACAUACCGCCACUGGCCAACACCUUUG .((..(((((.((...(((((.(.((((((.((.(---(.(((((((.....))))))).)).))((((.((((.((((((....))))------)).)))).)))).....)))))).).)))))(((..(......)..))).........)).)))))...))....... ( -62.80, z-score = -1.71, R) >droYak2.chr3L 3539311 164 - 24197627 AGUCCCUAGUAGCACUGCGGCUGCUCCUGCUUCUG---CCGUCGAGUCCUCUGCUCUUCUGCAGACAGCUGGAGGAGCGGCUCCAGCUG------UUGCUCCAGCAGCUUAUGCAGGAUCUGCUGUGGUCUCACCAACGUUGCCUUACAUACCGCCGCUGGCCAACACAUUUG .((..((((..((((..((((.(.((((((.((((---(.(..((((.....))))..).)))))..(((((((.((((((....))))------)).))))))).......)))))).).))))..)).........((......)).....))..))))...))....... ( -65.60, z-score = -1.93, R) >droSec1.super_29 563790 167 + 700605 AGUGACCAGCAGCUCAGCUGCUGCUCCUGCUGCUGCCUCCGCGGAGUCCUCUGCUCCACUGCUGACUGCCGGAGGAGCGGCACCGGCUG------UUGCUCAAGCAGCCCAUGCAGGAUCCGCAGUGGUCUCACCAACGUUGCCUUACAUACCGCCACUGGCCAACACCUUUG .(.((((((((((......)))))((((((((((.((((((.(.((((....((......)).)))).)))))))))))))...(((((------((.....))))))).....)))).......))))).)......((((((...............)).))))....... ( -67.86, z-score = -1.27, R) >droSim1.chr3L 19215250 167 + 22553184 AGUGACCAGCAGCUCCGCUGCUGCCCCUGCUGCUGCCUCCGCGGAGUCCUCUGCUCCGCUGCUGACUGCCGGAGGAGCGGCACCGGCUG------UUGCUCAAGCAGCCCAUGCAGGAUCCGCUGUGGUCUCACCAACGUUGCCUUACAUACCGCCGCUGGCCAACACCUUUG .(.(((((.(((((((((.((.(((..(((((((.((((((((((((.....))))))).((.....)).))))))))))))..))).)------).))....(((.....))).)))...))))))))).)......((((((...............)).))))....... ( -70.46, z-score = -1.75, R) >droWil1.scaffold_180698 2785577 146 + 11422946 ------------GACGUCAAGCGGAGCUGGAUCAGCGACCAAUGAGGCUGCAGCUCCAUUGUUAACUGGGGGAGGAGCA---UCAGUUG------CUGCUGCAGUGGCUCC------ACCUGCGGUUGUUUCACCAACGAUGCCUUACAUACCACCAUUGGCCAAUACAUUUG ------------...(((((..(((((((...((((..........))))))))))).........(((((.(((.(((---((.((((------(.(((((((((....)------).))))))).)......)))))))))))).....)).))))))))........... ( -47.80, z-score = -0.06, R) >consensus _GU_CCCAGC_GCUCUGCGGCUGCUCCUGCUUCUGC__CCGCGGAGGCCUCUGCUCCACUGCUGACUGCCGGAGGAGCAGC_CCGGCUG______CUGCCCCAGCGGCCGAUGCAGGAUCUGCUGUGGUCUCACCAACGUUGCCUUACAUACCGCCACUGGCCAACACCUUUG ...........................................(((.(.....((((.............)))).......................(((.....)))...................).)))......((((((...............))).)))....... ( -9.47 = -8.29 + -1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:38:44 2011