| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,895,773 – 19,895,875 |
| Length | 102 |
| Max. P | 0.989800 |
| Location | 19,895,773 – 19,895,875 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 91.26 |
| Shannon entropy | 0.14410 |
| G+C content | 0.45340 |
| Mean single sequence MFE | -31.50 |
| Consensus MFE | -30.66 |
| Energy contribution | -30.26 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.39 |
| SVM RNA-class probability | 0.989800 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19895773 102 - 24543557 GGUGUUGUUUGUUGUUGGUGCUUUUUGCUUUCCGUUGAUUAGCAUGCAUA--UGUAUUUGUGCUGAAGAUAUCGCACUGGUUACCAGCCGACGACGACGACUUU ...((((((.(((((((((((....((((.((....))..)))).))...--.(((...((((.((.....))))))....)))..)))))))))))))))... ( -29.40, z-score = -1.70, R) >droSim1.chr3L 19190418 99 - 22553184 GGUGUUGUUU---GUUGGUGCUUUUUGCUUUCCGUUGAUUAGCAUGCAUA--UGUAUGUGUGCUGAAGAUAUCGCACUGGCUACCAGCCGACGACGACGACUUU .((((((((.---(((((((((...(((.....(((..(((((((((((.--...))))))))))).)))...)))..))).)))))).)))))).))...... ( -34.30, z-score = -3.06, R) >droSec1.super_29 541163 101 - 700605 GGUGUUGUUU---GUUGGUGCUUUUUGCUUUCCGUUGAUUAGCAUGCAUAUGUGUAUGUGUGCUGAAGAUAUCGCACUGGCUACCAGCCGACGACGACGACUUU .((((((((.---(((((((((...(((.....(((..((((((((((((....)))))))))))).)))...)))..))).)))))).)))))).))...... ( -35.70, z-score = -3.21, R) >droYak2.chr3L 3516403 96 + 24197627 GGUGUUAUUU---GUUGGUGCUUUUUGCUUUCCGUUGAUUAGCAUGCAUA--UGUAUGUGUGCUGAAGAUAUCGCACUGGCUGCCAAUCGACGACGACUUU--- (((((..((.---(((((((((...(((.....(((..(((((((((((.--...))))))))))).)))...)))..))).)))))).))..)).)))..--- ( -27.90, z-score = -1.58, R) >droEre2.scaffold_4784 19634118 96 - 25762168 GGUGUUGUUU---GUUGGUGCUUUUUGCUUUCCGUUGAUUAGCAUGCAUA--UGUAUGUGUGCUGAAGAUAUCGCACUGGCUGCCAACCGUCGACGACUUU--- (((((((...---(((((((((...(((.....(((..(((((((((((.--...))))))))))).)))...)))..))).))))))...)))).)))..--- ( -30.20, z-score = -2.10, R) >consensus GGUGUUGUUU___GUUGGUGCUUUUUGCUUUCCGUUGAUUAGCAUGCAUA__UGUAUGUGUGCUGAAGAUAUCGCACUGGCUACCAGCCGACGACGACGACUUU ...((((((....(((((((((...(((.....(((..((((((((((((....)))))))))))).)))...)))..))).))))))....))))))...... (-30.66 = -30.26 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:38:41 2011