| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,860,388 – 19,860,473 |
| Length | 85 |
| Max. P | 0.671802 |
| Location | 19,860,388 – 19,860,473 |
|---|---|
| Length | 85 |
| Sequences | 3 |
| Columns | 85 |
| Reading direction | reverse |
| Mean pairwise identity | 78.04 |
| Shannon entropy | 0.32203 |
| G+C content | 0.46588 |
| Mean single sequence MFE | -26.37 |
| Consensus MFE | -17.05 |
| Energy contribution | -17.83 |
| Covariance contribution | 0.79 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.671802 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19860388 85 - 24543557 CUGUGGAGCAUUGUAGAGUAUGGGCUGAGGACUAUCAACUUAUACAAAAUGUCCAUGCUGCAAUGCACUGGGUUUCCCAGGUACA ..(((..(((((((..(((((((((((((.........))))........)))))))))))))))).(((((...))))).))). ( -29.20, z-score = -2.05, R) >droSec1.super_29 505911 85 - 700605 CUGUGGAGCAUCAUGGAGUCCGGGCUGUGGACUAUCAACUUAGCCAAAAUGUCCAUGCUGCAAUUCGCUAGUUUUUAAGCGAAAU .......(((.((((((.....(((((.(.........).)))))......)))))).)))..((((((........)))))).. ( -26.00, z-score = -1.75, R) >droSim1.chr3L 19151892 75 - 22553184 CUGUGGAGCAUUGUGGAGUCCGGGCUGAGGACAUUCAACUUAGCCAAAAUGUCCAUGCUGCAAUUCGCUAGUUUU---------- ..((((((((..(((((.....(((((((.........)))))))......)))))..)))..))))).......---------- ( -23.90, z-score = -1.52, R) >consensus CUGUGGAGCAUUGUGGAGUCCGGGCUGAGGACUAUCAACUUAGCCAAAAUGUCCAUGCUGCAAUUCGCUAGUUUU_____G_A__ ((((((((((.((((((.....(((((((.........)))))))......)))))).)))..))))).)).............. (-17.05 = -17.83 + 0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:38:38 2011