| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,836,531 – 19,836,640 |
| Length | 109 |
| Max. P | 0.936941 |
| Location | 19,836,531 – 19,836,640 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 84.46 |
| Shannon entropy | 0.30003 |
| G+C content | 0.47657 |
| Mean single sequence MFE | -33.79 |
| Consensus MFE | -29.88 |
| Energy contribution | -28.50 |
| Covariance contribution | -1.38 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.936941 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19836531 109 - 24543557 ACAAUCUUUAACCGUAUAUAAUAUCAAACACUCGACUUACACUGCAUGUUCUGCUGAUGCGGAGCGUAUUGGUUGUGGUACGGUUGUGGCGGCUGCUGCUGCUGCGGCG .........((((((((......((........))....(((.(((((((((((....)))))))))....)).)))))))))))(..(((((....)))))..).... ( -36.50, z-score = -1.77, R) >droYak2.chr3L 3463603 109 + 24197627 ACAAUCUUAAAUCAUAUAAAAUAUCAAACAUUCGACUUACACUGCAUGUUCUGCUGAUGCGGAGCGUAUUGGUUGUGGUACGGUUGCGGCGGCUGCUGCUGCUGCGGCG ................................(((((.(((((..(((((((((....)))))))))...)).)))))).))(((((((((((....))))))))))). ( -36.30, z-score = -2.23, R) >droEre2.scaffold_4784 19588206 109 - 25762168 ACAAUCUUGAACCAUAGAAAAUAUCAAACAUUCGACUUACACUGCAUGUUCUGCUGAUGCGGAGCGUAUUGGUUGUGGUAUGGUUGUGGCGGCUGCUGCUGCUGCGGCG ..........(((((((..(((.((........))..........(((((((((....))))))))))))..)))))))...((((..(((((....)))))..)))). ( -36.30, z-score = -1.80, R) >droSec1.super_29 490245 109 - 700605 ACAAUCUUUAACCAUAUAGAAUAUCAAAAACUCGACUUACACUGCAUGUUCUGCUGAUGCGGAGCGUAUUGGUUGUGAUACGGUUGUGGCGGCUGCUGCUGCUGUGGCG ...(((..((((((.........((........))..........(((((((((....)))))))))..)))))).)))...((..(((((((....)))))))..)). ( -33.10, z-score = -1.61, R) >droSim1.chr3L 19121345 109 - 22553184 ACAAUCUUUAACCAUAUAGAAUAUGAAACACUCGACUUACACUGCAUGUUCUGCUGAUGCGGAGCGUAUUGGUUGUGAUACGGUUGUGGCGGCUGCUGCUGCUGCGGCG ...(((..((((((.........(((.....)))...........(((((((((....)))))))))..)))))).)))...((((..(((((....)))))..)))). ( -35.80, z-score = -2.09, R) >droWil1.scaffold_180698 8671531 103 + 11422946 ------GUGAUGGAGCUAUAAAAGUUGACGCUUGACUCACUUUGCAUAUUCUGCUGAUGUGGAUUAUAUUGAUUGUGAUAUUGCUGCGGGGUCUGCUGCUGUUGCGGUG ------(((((.((((.............)))).).))))...(((.(((((((....(..(((((((.....)))))).)..).))))))).)))(((....)))... ( -24.72, z-score = -0.21, R) >consensus ACAAUCUUUAACCAUAUAAAAUAUCAAACACUCGACUUACACUGCAUGUUCUGCUGAUGCGGAGCGUAUUGGUUGUGAUACGGUUGUGGCGGCUGCUGCUGCUGCGGCG ................................((..(((((((..(((((((((....)))))))))...)).)))))..))(((((((((((....))))))))))). (-29.88 = -28.50 + -1.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:38:36 2011