Locus 8053

Sequence ID	dm3.chr3L
Location	19,796,710 – 19,796,762
Length	52
Max. P	0.780922

overview

Window 3

Location	19,796,710 – 19,796,762
Length	52
Sequences	6
Columns	52
Reading direction	reverse
Mean pairwise identity	87.18
Shannon entropy	0.25214
G+C content	0.61615
Mean single sequence MFE	-13.18
Consensus MFE	-10.35
Energy contribution	-10.68
Covariance contribution	0.34
Combinations/Pair	1.21
Mean z-score	-1.74
Structure conservation index	0.78
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.67
SVM RNA-class probability	0.780922
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 19796710 52 - 24543557
CCACCACCUGGUCCUGAUCCGCACUCUGUACCACACCACAGCUACAGAGGCG
..(((....))).......(((.(((((((.(........).)))))))))) ( -14.20, z-score =  -2.13, R)
>droSim1.chr3h_random 192817 52 + 1452968
CCACCACCUGGUCCAGAUCCGCACUCUGUACCACACCACAGCUACAGAGGCG
..(((....))).......(((.(((((((.(........).)))))))))) ( -14.20, z-score =  -2.47, R)
>droSec1.super_123 50885 52 - 76498
CCACCACCUGGUCCUGAUCUGCACUCUGUACCACACCACAGCUACAGAGACG
..(((....)))...........(((((((.(........).)))))))... ( -10.20, z-score =  -0.83, R)
>droYak2.chrU 26223439 52 + 28119190
CCACCACCUGGUCCCGAUCCGCACUCUGUACCACACCACAGCUACAGAGGCG
..(((....))).......(((.(((((((.(........).)))))))))) ( -14.20, z-score =  -2.59, R)
>droEre2.scaffold_4784 1742119 52 + 25762168
CCACCACCUGGUCCCGAUCCGCACUCUGUACCACACCACAGCUACAGAGGCG
..(((....))).......(((.(((((((.(........).)))))))))) ( -14.20, z-score =  -2.59, R)
>droAna3.scaffold_13230 281249 50 + 3602488
CCACCACCUGGUCUCGAUCGGUGCUCCGCAUCGCUACAUGACUGCAGAGG--
....((((.(((....)))))))(((.((((((.....))).))).))).-- ( -12.10, z-score =   0.16, R)
>consensus
CCACCACCUGGUCCCGAUCCGCACUCUGUACCACACCACAGCUACAGAGGCG
..(((....))).......(((.(((((((.(........).)))))))))) (-10.35 = -10.68 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:38:32 2011