| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,780,889 – 19,780,962 |
| Length | 73 |
| Max. P | 0.553698 |
| Location | 19,780,889 – 19,780,962 |
|---|---|
| Length | 73 |
| Sequences | 5 |
| Columns | 73 |
| Reading direction | forward |
| Mean pairwise identity | 97.26 |
| Shannon entropy | 0.04638 |
| G+C content | 0.32504 |
| Mean single sequence MFE | -5.40 |
| Consensus MFE | -5.40 |
| Energy contribution | -5.40 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.79 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.553698 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19780889 73 + 24543557 UCCAUAUUAUUUAAACCCACACAAAUUAAGAUACAGCUAGAGAUAGAGAUAGAUAGCGAGAUAGAGCUGAAAA .................................(((((....((...(........)...))..))))).... ( -5.40, z-score = -0.90, R) >droSim1.chr3L 19072376 73 + 22553184 UCCAUAUUAUUUAUACCCACACAAAUAAAGAUACAGCUAGAGAUAGAGAUAGAUAGCGAGAUAGAGCUGAAAA .................................(((((....((...(........)...))..))))).... ( -5.40, z-score = -0.82, R) >droSec1.super_29 442044 73 + 700605 UCCAUAUUAUUUAUACCCACACAAAUAAAGAUACAGCUAGAGAUAGAGAUAGAUAGCGAGAUAGAGCUGAAAA .................................(((((....((...(........)...))..))))).... ( -5.40, z-score = -0.82, R) >droYak2.chr3L 3415358 72 - 24197627 -UCAUAUUAUUUAUACCCACACAAAUAAAGAUACAGCUAGAGAUAGAGAUAGAUAGCGAGAUAGAGCUGAAAA -................................(((((....((...(........)...))..))))).... ( -5.40, z-score = -0.70, R) >droEre2.scaffold_4784 19539497 72 + 25762168 -UCAUAUUAUUUAUACCCACACAAAUAAAGAUACAGCUAGAGAUAGAGAUAGAUAGCGAGAUAGAGCUGAAAA -................................(((((....((...(........)...))..))))).... ( -5.40, z-score = -0.70, R) >consensus UCCAUAUUAUUUAUACCCACACAAAUAAAGAUACAGCUAGAGAUAGAGAUAGAUAGCGAGAUAGAGCUGAAAA .................................(((((....((...(........)...))..))))).... ( -5.40 = -5.40 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:38:31 2011