| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,758,586 – 19,758,689 |
| Length | 103 |
| Max. P | 0.633188 |
| Location | 19,758,586 – 19,758,689 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 69.84 |
| Shannon entropy | 0.52090 |
| G+C content | 0.36376 |
| Mean single sequence MFE | -20.16 |
| Consensus MFE | -10.62 |
| Energy contribution | -11.22 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.633188 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19758586 103 - 24543557 ACUAGGAUUAUUUGCCUCGUACUUCAAAAGUUCAAGGGUAUGAUGGUAUGAUGGUCAGCAAAGACAAGUAAAAUAGUAAUAAUAAUUCCAAUUAAACGCUUUU ....((((((((((((((((((((...........)))))))).)))).....(((......)))...............))))))))............... ( -17.00, z-score = -0.18, R) >droSim1.chr3L 19054979 92 - 22553184 ACUAGGAUUAUUUGCCUCGUACUUUAAAAGUUCAAGGGUAUGAUGGUUC---CGUCAGCAAUGACAAGUAAAAUAGU--------UCACAAUUGAAUGCAUUU ....(((((((((((((((((((((.........))))))))).)))..---.((((....)))).....)))))))--------))................ ( -22.40, z-score = -2.31, R) >droSec1.super_29 424806 92 - 700605 ACUAGGAUUAUUUGCCUCGUACUUUAAAAGUUCAAGGGUAUGAUGGUUC---UGUCAGCAAUGACAAGUAAAAUAGU--------UCGCAUUUGAAUGCAUUU ....(((((((((((((((((((((.........))))))))).)))..---(((((....)))))....)))))))--------))((((....)))).... ( -26.20, z-score = -3.36, R) >droYak2.chr3L 3397930 81 + 24197627 ACUAGGAUUAUUUGCCCCUCACUUUAAAAGUUCAAGGGUAUGAUGGUUC---GGUGAGACAUGACAGUUCAUACUGAACGCUUU------------------- (((.(((((((((((((...(((.....)))....))))).))))))))---)))...........((((.....)))).....------------------- ( -16.30, z-score = 0.13, R) >droEre2.scaffold_4784 19520218 86 - 25762168 ACUAGGAUUAUUUGCCCCUCACUUAAAAAGAUCAAGGGUAUGAUGGUUC---UGUGAGACAUGACGGGUAAAACAGUACAUAGUCUUCA-------------- ..(((((((((((((((....((.....)).....))))).))))))))---)).((((((((((.(......).)).))).)))))..-------------- ( -18.90, z-score = -0.13, R) >consensus ACUAGGAUUAUUUGCCUCGUACUUUAAAAGUUCAAGGGUAUGAUGGUUC___GGUCAGCAAUGACAAGUAAAAUAGUA_______UCCCA_UU_AA_GC_UUU ....(((((((((((((...(((.....)))....))))).))))))))....((((....))))...................................... (-10.62 = -11.22 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:38:28 2011