| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,771,063 – 5,771,183 |
| Length | 120 |
| Max. P | 0.593113 |
| Location | 5,771,063 – 5,771,183 |
|---|---|
| Length | 120 |
| Sequences | 13 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.98 |
| Shannon entropy | 0.46308 |
| G+C content | 0.52462 |
| Mean single sequence MFE | -40.53 |
| Consensus MFE | -21.95 |
| Energy contribution | -22.33 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.593113 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5771063 120 - 23011544 GCCAGAAAAUGUUCACCCGCCGCAAUUGGUUGUUGCGCUGCAGCAUCCUUAUCAAUGUGGCGGUGAUCCUGUACAUUGGCAGUCAAUUGAUGAUCGGCGGCGGCAACAACUUCUCGAACG .(.((((..((((...(((((((.((..((((((((((....))........(((((((.(((.....)))))))))))))).))))..)).....))))))).))))..)))).).... ( -40.70, z-score = -1.16, R) >droSim1.chr2L 5567626 120 - 22036055 GCCAGAAAAUGUUCACCCGCCGCAAUUGGUUGCUGCGCUGCAGCAUCCUAAUCAAUGUGGCGGUGAUCCUGUACAUCGGCAGUCAGUUGAUGAUCGGCGGCGGCAACAACUUCUCGAAUG (((.........(((((.(((((((((((.((((((...))))))..)))))...)))))))))))..(((..(((((((.....)))))))..))).)))(....)............. ( -43.10, z-score = -1.50, R) >droSec1.super_5 3849817 120 - 5866729 GCCAGAAAAUGUUCACCCGCCGCAAUUGGUUGCUGCGCUGCAGCAUCCUAAUCAAUGUGGCGGUGAUCCUGUACAUCGGCAGCCAGUUGAUGAUCGGCGGCGGCAACAACUUCUCGAAUG .(.((((..(((((..(((((((((((((((((((((((((.((((........)))).))))))...........))))))))))))).....))))))..).))))..)))).).... ( -45.70, z-score = -1.99, R) >droYak2.chr2L 8904139 120 + 22324452 GCCAGAAAAUGUUCACACGCCGCAACUGGUUGCUGCGCUGCAGCAUCCUAAUCAAUGUGGCGGUGAUCCUGUACAUCGGCAGUCAGCUGAUGAUCGGCGGCGGCAACAACUUCUCCAAUG (((.........((((.(((((((...((.((((((...)))))).)).......)))))))))))..(((..(((((((.....)))))))..))).)))(....)............. ( -45.00, z-score = -2.07, R) >droEre2.scaffold_4929 5863032 120 - 26641161 GCCAGAAAAUGUUCACACGCCGCAACUGGUUGCUGCGCUGCAGCAUCCUAAUCAAUGUGGCGGUGAUCCUGUACAUCGGCAGUCAGUUGAUGAUCGGCGGCGGCAACAACUUCUCCAAUG (((.........((((.(((((((...((.((((((...)))))).)).......)))))))))))..(((..(((((((.....)))))))..))).)))(....)............. ( -42.50, z-score = -1.49, R) >droAna3.scaffold_12916 11206023 120 - 16180835 GCCAGAAAAUGUUCACACGCCGCAACUGGCUGCUCCGCUGCAGCAUUCUCAUCAAUGUGGCAGUGAUCCUGUACAUUGGCAGCCAGUUGAUGAUUGGUGGCGGUAACAACUUUACAAACG .........((((.((.((((((((((((((((..((((((.(((((......))))).))))))...(........)))))))))))........))))))))))))............ ( -42.10, z-score = -1.95, R) >dp4.chr4_group1 4661417 120 + 5278887 GCCAGAAAAUGUUCUCGCGCCGUAAUUGGCUGCUGCGCUGCAGCAUUCUCAUAAAUAUUGCCGUAAUUUUGUACAUUGGCAGUCAGCUGAUGAUUGGCGGCGGCAAUAACUUCGCCAAUG ((.((((....)))).))......((((((((((((...))))))..........(((((((((......((.(((..((.....))..))))).....))))))))).....)))))). ( -40.80, z-score = -1.54, R) >droPer1.super_1 9670614 120 + 10282868 GCCAGAAAAUGUUCUCGCGCCGUAAUUGGCUGCUGCGCUGCAGCAUUCUCAUAAAUAUUGCCGUAAUUUUGUACAUUGGCAGUCAGCUGAUGAUUGGCGGCGGCAAUAACUUCGCCAAUG ((.((((....)))).))......((((((((((((...))))))..........(((((((((......((.(((..((.....))..))))).....))))))))).....)))))). ( -40.80, z-score = -1.54, R) >droWil1.scaffold_180708 4176066 120 + 12563649 GCCAAAAGAUGUUCACCCGUCGGAAUUGGCUGCUGCGAUGCAGCAUCCUCAUCAAUAUCGCAGUGAUCCUUUACAUAGGCAGCCAACUAAUGAUUGGCGGCGGCAAUAAUUUCAGCAAUG ((..(((..(((((..(((((((..(((((((((((((((...............)))))).((((....))))...)))))))))(....).)))))))..).)))).)))..)).... ( -33.66, z-score = -0.42, R) >droMoj3.scaffold_6500 14296699 120 - 32352404 GUCAGAAAAUGUUCACACGCCGCAACUGGCUGCUGCGGUGCAGCAUUCUCAUAAAUGUGGCUGUUCUGCUCUACAUCGGCUGCAUCCUGAUGAACGGCGGAGGCAACAAUUUCACCAGCG ....((.(((((((((.(((.(((......))).)))))).)))))).)).........((((.((((((...((((((.......))))))...))))))(....)........)))). ( -38.10, z-score = -0.59, R) >droGri2.scaffold_15252 3330864 120 - 17193109 GUCAGAAAAUGUUCACACGUCGUAAUUGGCUACUGCGCUGCAGCAUACUCAUAAACGUGGCCGUCCUACUUUACAUAGGCUGCCUUGUGACAAUUGGCGGCGGCAACAAUUUCACUAGCG ....((((.((((....(((((((((((....((((...)))).....((((((..(..(((...............)))..).))))))))))).))))))..)))).))))....... ( -31.76, z-score = -0.05, R) >droVir3.scaffold_12723 1447655 120 + 5802038 GUCAGAAAAUGUUUACACGCCGCAAUUGGCUGUUGCGCUGCAGCAUACUCAUCAACGUAGCCGUCCUACUGUACAUAGGCUGCAUUCUGAUGAAUGGCGGCGGCAACAAUUUCACCAGCG ....((((.((((....((((((.....(((((......)))))....((((((..((((((...............))))))....))))))...))))))..)))).))))....... ( -40.56, z-score = -1.88, R) >anoGam1.chr3R 20514155 100 + 53272125 -----------------CGUCGCAACUGGCUUCUGCGCUGCAGCAUCCUGAUCAACGUGGCGGUGGUGCUGUACAUCGCCAGCCAUCUGCUGAUCGGGAGCGGCAACUUUGCCCUCG--- -----------------....((((...((....))(((((....(((((((((.(((((((((((((.....))))))).)))))..).))))))))))))))....)))).....--- ( -42.10, z-score = -1.78, R) >consensus GCCAGAAAAUGUUCACACGCCGCAAUUGGCUGCUGCGCUGCAGCAUCCUCAUCAAUGUGGCGGUGAUCCUGUACAUCGGCAGCCAGCUGAUGAUCGGCGGCGGCAACAACUUCACCAAUG (((.(((....)))....(((((....((.((((((...)))))).)).........................((((((.......))))))....))))))))................ (-21.95 = -22.33 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:19:48 2011