| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,673,073 – 19,673,172 |
| Length | 99 |
| Max. P | 0.773601 |
| Location | 19,673,073 – 19,673,172 |
|---|---|
| Length | 99 |
| Sequences | 12 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 66.91 |
| Shannon entropy | 0.66123 |
| G+C content | 0.47867 |
| Mean single sequence MFE | -24.20 |
| Consensus MFE | -9.87 |
| Energy contribution | -9.87 |
| Covariance contribution | -0.01 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.773601 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19673073 99 + 24543557 CCCGCCGU-UUGUCUCUCUGUCUCGCUGCCCAACUUUGUCAAGCGCACAUAACAAAGUGUUAUGUGU-------CUUGUAACUAACACUA----UGUGGCCAGGACUCUGG- ....(((.-..(((...(((.(.(((.............((((.(((((((((.....)))))))))-------))))............----.)))).))))))..)))- ( -22.47, z-score = -0.57, R) >droSim1.chr3L 19000797 99 + 22553184 CCCGCCGU-UUGUCUCUCUGUCUCGCUGCCCAACUUUGUCAAGCGCACAUAACAAAGUGUUAUGUGU-------CUUGUAACUAACACUA----UGUGGCCAGGACUCUGG- ....(((.-..(((...(((.(.(((.............((((.(((((((((.....)))))))))-------))))............----.)))).))))))..)))- ( -22.47, z-score = -0.57, R) >droSec1.super_29 375637 84 + 700605 ---------CCCGCCGUUUGUC-------CCAACUUUGUCAAGCGCACAUAACAAAGUGUUAUGUGU-------CUUGUAACUAACACUA----UGUGGCCAGAACUCUGG- ---------.((((.(((((.(-------........).)))))(((((((((.....)))))))))-------................----.))))((((....))))- ( -22.80, z-score = -2.28, R) >droYak2.chr3L 3326712 91 - 24197627 ---------CCCGCCGUUUGUCUCGCUGCCCAACUUUGUCAAGCGCACAUAACAAAGUGUUAUGUGU-------CUUGUAACUAACACUA----UGUGGCCAGGACUCCGG- ---------....(((...((((.((..(........((((((.(((((((((.....)))))))))-------))))..))........----.)..))..))))..)))- ( -25.23, z-score = -1.68, R) >droEre2.scaffold_4784 19471176 91 + 25762168 ---------CCCGCCGUUUGUCUCGCCGCCCAACUUUGUCAAGCGCACAUAACAAAGUGUUAUGUGU-------CUUGUAACUAACACUA----UGUGGCCAGGACUCUGG- ---------....(((...((((.(((((........((((((.(((((((((.....)))))))))-------))))..))........----.)))))..))))..)))- ( -26.33, z-score = -2.06, R) >droAna3.scaffold_13337 6074102 95 - 23293914 ---------AACGCCGUUUGUCUCGCUGCCCAACUUUGUCAAGCGCAAAUAACAAAGUGUUAUGUGU-------CUUUUGGCUACCACUAUGCGGCCUGGUCGGUCUGUGG- ---------..(((.(.(((.((.(((((........((((((.(((.(((((.....))))).)))-------..)))))).........)))))..)).))).).))).- ( -21.83, z-score = 0.73, R) >dp4.chrXR_group8 7750461 112 + 9212921 ACCGCUGUGCUGUCUCGCUGUCUCGCUGCCCAACUUUGUCAAGCGCACAUAACAAAGUGUUAUGUGUUCUGUGUCUUGUAACUAACACUACGAGUGUGGCCGGCACUGUGGU (((((.((((((.(.(((...((((................((.(((((((((.....))))))))).))((((..........))))..)))).)))).)))))).))))) ( -38.10, z-score = -2.11, R) >droPer1.super_48 529012 112 + 581423 ACCGCUGUGCUGUCUCGCUGUCUCGCUGCCCAACUUUGUCAAGCGCACAUAACAAAGUGUUAUGUGUUCUGUGUCUUGUAACUAACACUACGAGUGUGGCCGGCACUGUGGU (((((.((((((.(.(((...((((................((.(((((((((.....))))))))).))((((..........))))..)))).)))).)))))).))))) ( -38.10, z-score = -2.11, R) >droWil1.scaffold_180949 4808511 92 + 6375548 -----------ACCGUUUUGUCUCGUUGCCCAACUUUGUCAAGCGCAAAUAACAAACUGUUAUGUGUCUU----UGUAUAACUAACACUA----UGUGUACACGACUCCAC- -----------...(((.((((.(((.........((((((((.(((.(((((.....))))).))).))----)).))))........)----)).).))).))).....- ( -13.43, z-score = 0.49, R) >droVir3.scaffold_13049 13259826 81 + 25233164 ---------------------GGCCCGGCACAACUUUGUCAAGCGCACAUAACAAAGUGUUAUGUGCCU-----UCU--AACUAACAGAAUGUGCCCGUAAAAA-UACCC-- ---------------------.....((((((..(((((.(((.(((((((((.....)))))))))))-----)..--.....))))).))))))........-.....-- ( -24.00, z-score = -3.47, R) >droMoj3.scaffold_6680 10662079 84 - 24764193 ---------------------AGACCGCCACAACUUUGUCAAGCGCACAUAACAAAGUGUUAUGGGCCU-----UCUCUAACUAACACAAUGCGGCCGUAAAAAAUACCC-- ---------------------.(.((((.(((....))).(((.((.((((((.....)))))).))))-----)................)))).).............-- ( -14.90, z-score = -0.27, R) >droGri2.scaffold_15110 18698599 81 + 24565398 ---------------------AGCGCCGUACAACUUUGUCAAGCGCGCAUAACAAAGUGUUAUGUGCCU-----UGU--AACUAACACUAUGUGGCCGUAAAAA-UACCC-- ---------------------.(((((........(((.((((.(((((((((.....)))))))))))-----)))--))...((.....)))).))).....-.....-- ( -20.80, z-score = -1.31, R) >consensus _________C_CGCCCUUUGUCUCGCUGCCCAACUUUGUCAAGCGCACAUAACAAAGUGUUAUGUGU_______CUUGUAACUAACACUA____UGUGGCCAGGACUCUGG_ ............................................(((((((((.....)))))))))............................................. ( -9.87 = -9.87 + -0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:38:16 2011