| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,650,000 – 19,650,090 |
| Length | 90 |
| Max. P | 0.772546 |
| Location | 19,650,000 – 19,650,090 |
|---|---|
| Length | 90 |
| Sequences | 13 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 71.98 |
| Shannon entropy | 0.61079 |
| G+C content | 0.49836 |
| Mean single sequence MFE | -20.56 |
| Consensus MFE | -11.90 |
| Energy contribution | -12.29 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.24 |
| Mean z-score | -0.71 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.772546 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19650000 90 - 24543557 ---------AUUUGCACUUCGA---UUUCCAUCCGGCAGAAUCUGUUCAAUGGCAGCGAAUCAUUUCGCACGGAUUCGGCCAGCCCCACAUGCACAUCGCAC ---------...(((.......---.........(((.((((((((.........(((((....))))))))))))).))).((.......)).....))). ( -23.40, z-score = -1.13, R) >droSim1.chr3L 18976117 90 - 22553184 ---------AUUUGCACUUCGA---UUUCCAUCCGGCAGAAUCUGUUCAAUGGCAGCGAAUCAUUUCGCACGGAUUCGGCCAGCCCCACAUGCACAUCGCAC ---------...(((.......---.........(((.((((((((.........(((((....))))))))))))).))).((.......)).....))). ( -23.40, z-score = -1.13, R) >droSec1.super_29 352828 90 - 700605 ---------AUUUGCACUUCGA---UUUCCAUCCGGCAGAAUCUGUUCAAUGGCAGCGAAUCAUUUCGCACGGAUUCGGCCAGCCCCACAUGCACAUCGCAC ---------...(((.......---.........(((.((((((((.........(((((....))))))))))))).))).((.......)).....))). ( -23.40, z-score = -1.13, R) >droYak2.chr3L 3303476 90 + 24197627 ---------AUUUGCACUUCGA---UUUCCAUCCGGCAGAAUCUGUUCAAUGGCAGCGAAUCAUUUCGCACGGACUCGGCCAGCCCCACAUGCACAUCCCAU ---------...((((....((---(....))).(((.(((....)))..((((.(((((....))))).((....))))))))).....))))........ ( -20.70, z-score = -0.50, R) >droEre2.scaffold_4784 19449130 90 - 25762168 ---------AUUUGCACUUCGA---UUUCCAUCCGGCAGAAUCUGUUCAAUGGCAGCGAAUCAUUUCGCACGGAUUCGGCCAGCCCCACAUGCACAUCCCAC ---------...((((....((---(....))).(((.((((((((.........(((((....))))))))))))).))).........))))........ ( -22.70, z-score = -1.31, R) >droAna3.scaffold_13337 6051948 84 + 23293914 ---------------AUUUCGA---UUUCUAUCCGGCAGAAUCUGUUCAACGGCAGCGAAUCAUUUCGCACGGAUUCGGCCAGUCCCACAUGCACAUCCCAU ---------------.......---.........(((.((((((((.........(((((....))))))))))))).)))..................... ( -20.10, z-score = -1.27, R) >dp4.chrXR_group8 7723371 98 - 9212921 AUUUCGAUUUCUCUCGCUCUCG----CUCUCUCCAGCAGAAUCUGUUCAAUGGCAGCGAAUCAUUUCGCACGGAUUCGGCCAGUCCCACAUGCACAUCCCAU ...............(((((.(----((......))))))...(((....((((.(((((....))))).((....)))))).....))).))......... ( -18.90, z-score = 0.04, R) >droPer1.super_48 501900 102 - 581423 AUUUCGAUUUCUCUCGCUCUCGCUCUCUCUCUCCAGCAGAAUCUGUUCAAUGGCAGCGAAUCAUUUCGCACGGAUUCGGCCAGUCCCACAUGCACAUCCCAU ...............((....))............(((((((((((.........(((((....)))))))))))))((......))...)))......... ( -18.40, z-score = 0.28, R) >droWil1.scaffold_180949 4777077 102 - 6375548 AAUUGCCUUAUGUUGUUCUCUUUUUUUUCGUAUUUGCAGAAUCUUUUCAAUGGCAGCGAAUCAUUUCGCACGGAUUCGGCCAGUCCCACAUGUACAUCACAU ........(((((.(..((.......(((((...(((.(((....)))....)))(((((....)))))))))).......))..).))))).......... ( -17.24, z-score = -0.09, R) >droVir3.scaffold_13049 13231322 79 - 25233164 -----------------------AAUUGAAUUUUUGCAGAAUCUAUUCAAUGGCAGCGAAUCAUUUCGCACGGAUUCGGCCAGUCCCACGUGCACAUCACAC -----------------------...........(((((((....)))..((((.(((((....))))).((....))))))........))))........ ( -16.40, z-score = -0.59, R) >droMoj3.scaffold_6680 10633553 100 + 24764193 AAUUGAAUUUGGU--UUUUGUUUGUUAUUAUUGCUUCAGAAUCUUUUCAAUGGCAACGAAUCAUUUCGCACGGAUUCGGCCAGCCCCACGUGCACAUCACAC .((((((...((.--(((((...((.......))..))))).)).))))))(....)(((....)))(((((.....((....))...)))))......... ( -19.50, z-score = -0.15, R) >droGri2.scaffold_15110 18670693 78 - 24565398 -----------------------AAUUGAAUAUUU-CAGAAUCUCUUCAAUGGCAGCGAAUCAUUUCGCACGGAUUCGGCCAGUCCCACGUGCACAUCACAC -----------------------..((((.....)-)))...........((((.(((((....))))).((....)))))).......(((.....))).. ( -14.40, z-score = -0.39, R) >anoGam1.chr3L 23320845 76 + 41284009 ------------------------UUUACUGUUCGGUUCGUCCGGCUCG--GGUUCCGAAUCCUUCCGGACGGACUCGUCCAGCCCGGCCUGUACGUCACUG ------------------------....(((..((((((((((((...(--(((.....))))..)))))))))).))..)))...(((......))).... ( -28.80, z-score = -1.86, R) >consensus _________AUUU_CACUUCGA___UUUCCAUCCGGCAGAAUCUGUUCAAUGGCAGCGAAUCAUUUCGCACGGAUUCGGCCAGCCCCACAUGCACAUCACAC ...................................((((((....)))..((((.(((((....))))).((....))))))........)))......... (-11.90 = -12.29 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:38:13 2011