| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,619,953 – 19,620,045 |
| Length | 92 |
| Max. P | 0.667073 |
| Location | 19,619,953 – 19,620,045 |
|---|---|
| Length | 92 |
| Sequences | 11 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 63.18 |
| Shannon entropy | 0.78345 |
| G+C content | 0.42032 |
| Mean single sequence MFE | -21.84 |
| Consensus MFE | -8.42 |
| Energy contribution | -8.17 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.67 |
| Mean z-score | -0.83 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.667073 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19619953 92 + 24543557 CGAUUUGGGUUGGCAAUUGCUAUCAAGCUGGGCAUAUAGCAUACACUUCACAGGGGACUGCAA--GUU-AGAGUUGUUUUAUAAUUAAUGUUUUA--------- .((((......(((((((.(((....((((......))))....((((..(((....))).))--)))-)))))))))....)))).........--------- ( -16.00, z-score = 0.76, R) >droSim1.chr3L 18946197 103 + 22553184 CGAUUUGGGUUGGCAAUUGCUAUCCAGCUGGGCAUAUAGCAUACACUUCACAGGGGACUGCAAGAGUUGAGAGUUGUUUUAAAAAUUAUUCGUACACAAAGAA- ...((((((.((((....)))).)).((((......)))).(((((((..(((....)))...))))...((((.(((.....))).)))))))..))))...- ( -21.20, z-score = 0.05, R) >droSec1.super_29 323275 103 + 700605 CGAUUUGGGUUGGCAAUUGCUAUCCAGCUGGGCAUAUAGCAUACACUUCACAGGGGACUGCAAGAUUUGAGAGUUGUUUUAAAAAUUAUUCGUACACAAAGAA- ...((((((.((((....)))).)).((((......)))).(((.(((..(((....))).)))......((((.(((.....))).)))))))..))))...- ( -20.30, z-score = 0.05, R) >droYak2.chr3L 3273743 102 - 24197627 CGAUUUCGGUUGGCAAUUGCUAUCCAGGUGGGCAUAUAACAUACACUUCACAGGAGACUGCAA-AAUAGAAAGAUUUU-UAUAAAUAAUACGUUCACCAGUUGA (((((..((.((((....)))).)).(((((((.................(((....)))...-.((((((....)))-))).........)))))))))))). ( -24.80, z-score = -2.60, R) >droEre2.scaffold_4784 19419000 103 + 25762168 CGAUUUGGGUUGGUAAUUGCUAUCCAGCUGGGCAUAUAACAUACACUUCACAGGGGACUGCAA-AGUAGAGAGAUUUUGUAUAAUUUGUAUGUUCACCAAUGGA ....(((((((((..........)))))(((((((((((.((((((((..(((....)))..)-)))(((....))).))))...))))))))))))))).... ( -26.10, z-score = -1.21, R) >droAna3.scaffold_13337 6025227 84 - 23293914 AGAUUUCGGUUGGCAAUUGCUGUCUAGCUGGGCGUAGAGAACGCACUUGACGGGGGACUGGAA----AUGGAAUCGUUACAGACUGAA---------------- .((((((((((((((.....)).))))))..((((.....))))..((..(((....)))..)----).)))))).............---------------- ( -21.10, z-score = -0.47, R) >dp4.chrXR_group8 7694221 88 + 9212921 CGACUUUGGCUGGCAGUUUCCGUCCAGCUGGGCAUACAGCACGCAUUUUAUAGGGGACUACGG-UCAAAAAAAUUGUAUUAUUACCAUU--------------- ....((((((((..(((..((((((....)))).....(....)........))..))).)))-)))))....................--------------- ( -23.00, z-score = -1.56, R) >droPer1.super_48 472683 88 + 581423 CGACUUUGGCUGGCAGUUUCCGUCCAGCUGGGCAUACAGCACGCACUUUAUAGGGGACUACGG-UCAAAAAAAUUGUAUUAUUACCAUU--------------- ....((((((((..(((..((((((....))))(((.((......)).))).))..))).)))-)))))....................--------------- ( -23.30, z-score = -1.54, R) >droWil1.scaffold_180949 4730532 95 + 6375548 CGAUUUGGGUUGCAAAUUGUUGUCCAGUUGGGCAUAAAGUACACAUUUUACGGGUGACUGUAAAUCGUAAGAUAAGAUUACAAUUUCAUUGUUUC--------- (((((((.....))))))).(((((....)))))....(((......((((((....))))))(((....))).....)))..............--------- ( -21.80, z-score = -1.55, R) >droVir3.scaffold_13049 13201870 97 + 25233164 GGAUUUAGGCUGGCAAUUGCCAUCCAGCUGCGCAUACAGCACACACUUGACGGGACUCUAAAGCGUAAAAGAAAAGCAAAUUAAUUAAAGUUUCGUA------- .......((.((((....)))).)).((((......)))).........(((..(((.(((.((...........)).......))).)))..))).------- ( -20.80, z-score = -0.20, R) >droMoj3.scaffold_6680 10602739 86 - 24764193 GGAUUUCGGCUGGCUAUUGCCAUCCAGUUGCGCAUAGAGCACACAUUUCACGGGACUCUGAGGAAUGGAAGAGACGAAUAAGGAAU------------------ ..(((((((.((((....)))).)).((..(((.....))...((((((.(((....))).))))))...)..))......)))))------------------ ( -21.80, z-score = -0.81, R) >consensus CGAUUUGGGUUGGCAAUUGCUAUCCAGCUGGGCAUAUAGCACACACUUCACAGGGGACUGCAA_ACUAAAGAGUUGUUUUAUAAUUAAU___U_C_________ .......((.(((......))).)).((((......))))..........(((....)))............................................ ( -8.42 = -8.17 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:38:11 2011