| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,571,168 – 19,571,276 |
| Length | 108 |
| Max. P | 0.509017 |
| Location | 19,571,168 – 19,571,276 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 76.89 |
| Shannon entropy | 0.39260 |
| G+C content | 0.35519 |
| Mean single sequence MFE | -14.04 |
| Consensus MFE | -8.17 |
| Energy contribution | -8.61 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.509017 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19571168 108 - 24543557 AUC-AAUCAAAAUGAGACCCUAAUAUCUAUUUUGCAUGUACUGCAUGCAAAUACAAGUUAGUACUUGUGAUGUAAGACAAGCCCAGUCAGUCCAUCUCAACCCCAUUCU ...-........(((((.....(((((...((((((((.....)))))))).((((((....)))))))))))..(((.......)))......))))).......... ( -25.00, z-score = -3.81, R) >droEre2.scaffold_4784 19367850 83 - 25762168 AUC-AAUAUAACUGAAACCCUAAUAUCUAUUUUGCAUGUACUGCUUGCAAA----------UACUCAUGAUCUAAGUCAAACCCAACCC----AUUCU----------- ...-.........(((..............((((((.(.....).))))))----------......((((....))))..........----.))).----------- ( -6.80, z-score = -1.00, R) >droYak2.chr3L 3224740 95 + 24197627 AUCAAAUUAAACUGAGACCGUAAUAUCUAUUUUGCAUGUACUGCUUGCAAA----------UACUCAUGAUUUAAGCCAAACCCAGUCC----AUCCCAACCCAACUCU ...((((((...((((...(......)...((((((.(.....).))))))----------..))))))))))................----................ ( -7.90, z-score = -0.06, R) >droSec1.super_29 274786 100 - 700605 AUC-AAUCAAAAUGAGACCCUAAUAUCUAUUUUGCAUGUACUGCAUGCAAAUAC----UAGUACUUAUGAUUUAAGGCAAACCCAAUUU----AUCCUAGUCCCAUUCU ...-......((((.(((........(((.((((((((.....))))))))...----)))..((((.....)))).............----......))).)))).. ( -16.20, z-score = -1.95, R) >droSim1.chr3L_random 868390 100 - 1049610 AUC-AAUCAAAAUAAGACCCUAAUAUCUAUUUUGCAUGUACUGCAUGCAAAUAC----UAGUACUUAUGAUUUAAGGCGAACCCAGUUG----AUCCUAGUCCCAUUCU (((-(((...................(((.((((((((.....))))))))...----)))..((((.....)))).........))))----)).............. ( -14.30, z-score = -0.68, R) >consensus AUC_AAUCAAAAUGAGACCCUAAUAUCUAUUUUGCAUGUACUGCAUGCAAAUAC____UAGUACUUAUGAUUUAAGGCAAACCCAGUCC____AUCCUAACCCCAUUCU ...........(((((..............((((((((.....))))))))............)))))......................................... ( -8.17 = -8.61 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:38:09 2011