| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,563,525 – 19,563,580 |
| Length | 55 |
| Max. P | 0.591928 |
| Location | 19,563,525 – 19,563,580 |
|---|---|
| Length | 55 |
| Sequences | 7 |
| Columns | 71 |
| Reading direction | reverse |
| Mean pairwise identity | 72.96 |
| Shannon entropy | 0.45393 |
| G+C content | 0.46428 |
| Mean single sequence MFE | -14.26 |
| Consensus MFE | -9.00 |
| Energy contribution | -9.24 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.591928 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19563525 55 - 24543557 -------UGUCAUAAAUCGAGAAUCGGUUAGAAGCGGCCAUAAAUGUGGUCGCGUUUUGAGC--------- -------..(((..(((((.....)))))....((((((((....))))))))....)))..--------- ( -17.30, z-score = -2.96, R) >droSim1.chr3L_random 861086 55 - 1049610 -------UGUCAUAAAUCGAGAAUCGGUUAGAAGCGGCCAUAAAUGUGGUCGCGUUUUGAGC--------- -------..(((..(((((.....)))))....((((((((....))))))))....)))..--------- ( -17.30, z-score = -2.96, R) >droYak2.chr3L 3215308 55 + 24197627 -------UGUCAUAAAUCGAGAAUCGGUUAUAUGCGGCCAUAAACGCGGCCGCGUUUUGAAC--------- -------..(((..(((((.....)))))..((((((((........))))))))..)))..--------- ( -18.20, z-score = -2.24, R) >droEre2.scaffold_4784 19360883 55 - 25762168 -------UGUCAUAAAUCGAGAAUCGGGUAUAAGCGGUCAUAAACGCGGCCGCGUUUUGAGC--------- -------.........((((((..(((((....(((........))).))).))))))))..--------- ( -12.80, z-score = -0.30, R) >droAna3.scaffold_13337 5967198 64 + 23293914 -------UGCCAUAAAUUGAAAAUCGGUUCUAAGCGGCUAUAAACGCGGCCGCGUUUUAACAGCUAGCUGA -------.......(((((.....)))))....((((((........)))))).......(((....))). ( -14.40, z-score = 0.30, R) >dp4.chrXR_group8 7640184 54 - 9212921 -------CGUCAUAAAUCUA-AAUCGCUUUUGGGCGGCCAUAGACGCGAACGCGCUUUUAAC--------- -------.........((((-..(((((....)))))...))))(((....)))........--------- ( -9.90, z-score = 0.27, R) >droPer1.super_48 418315 61 - 581423 CGUCAUAAAUCUAAAAUCUA-AAUCGCUUUUGGGCGGCCAUAGACGCGAACGCGCUUUUAAC--------- ................((((-..(((((....)))))...))))(((....)))........--------- ( -9.90, z-score = 0.27, R) >consensus _______UGUCAUAAAUCGAGAAUCGGUUAUAAGCGGCCAUAAACGCGGCCGCGUUUUGAAC_________ .................................((((((........)))))).................. ( -9.00 = -9.24 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:38:06 2011