| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,560,141 – 19,560,236 |
| Length | 95 |
| Max. P | 0.904935 |
| Location | 19,560,141 – 19,560,236 |
|---|---|
| Length | 95 |
| Sequences | 11 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 68.48 |
| Shannon entropy | 0.60899 |
| G+C content | 0.32574 |
| Mean single sequence MFE | -16.87 |
| Consensus MFE | -9.83 |
| Energy contribution | -8.87 |
| Covariance contribution | -0.96 |
| Combinations/Pair | 1.36 |
| Mean z-score | -0.99 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.904935 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19560141 95 + 24543557 -CCCGACUUUCGUUUAUCUGAUAGUUUUGGUUUUCUUUUAGAAUAUCGCUACAAGAGUUGGUUUAAGUAACCAAAUU-----UUAGUUUGUCUUCUUGAUG---------- -.((((((((.((.....(((((.((((((.......)))))))))))..)).)))))))).(((((....(((((.-----...)))))....)))))..---------- ( -17.10, z-score = -1.13, R) >droSim1.chr3L 18892346 97 + 22553184 -CCCGACUUUCGUUAAUCUGAUAGUUUUGGUUUUCUUUUAGAAUAUCGCUACAAGAGUUGGUUUUAGUAACCAAAUUUG---UUUGUUUGUUAUCUUGAUG---------- -.((((((((.((.....(((((.((((((.......)))))))))))..)).)))))))).....(((((.((((...---...))))))))).......---------- ( -15.40, z-score = -0.52, R) >droSec1.super_29 263140 97 + 700605 -CCCGACUUUCGUUAAUCUGAUAGUUUUGGUUUUCUUUUAGAAUAUCGCUACAAGAGUUGGUUUUAGUAACCAAAUUUC---UUUGUUUGUUAUCGUGAUG---------- -..............((((((((((..((((.(((.....))).))))..))((((.((((((.....))))))...))---)).......))))).))).---------- ( -16.00, z-score = -0.62, R) >droYak2.chr3L 3209904 94 - 24197627 -CCCGACUUUCGUUUAUCUGAUAGAUU-GGUUUUCUUUUAGAAUAUCGCUACAAGAGUUGGUUUUAGUAACCAAAUU-----UUUGCUUGUCUUCUUGAUG---------- -...(((.........(((((.(((..-.....))).))))).........((((((((((((.....)))).))))-----))))...))).........---------- ( -16.90, z-score = -0.89, R) >droEre2.scaffold_4784 19357552 94 + 25762168 -CCCGACUUUCGGUUAUCUGAUAGUUU-GGUUUUCUUUUAGAAUAUCGCUACAAGAGUUGGUUUUAGUAACCAAAUU-----UUUGUUUGUCUUCUUGAUG---------- -((.((((.((((....)))).)))).-))...((....((((...((..(((((((((((((.....)))).))))-----))))).))..)))).))..---------- ( -20.40, z-score = -2.13, R) >droAna3.scaffold_13337 5963305 106 - 23293914 UAUCGACUUUCAUUU-CUUGAUAAAUU-GGGUUUCUUUUAGAAUAUCGCUACAAGAGUUGGUUUUAGUGACCAAAUUGU---GGUUUUUGCCUUCUUGAUGUUGGUUUUCA .((((((..(((...-...((((..((-(((.....)))))..))))(((((((...((((((.....)))))).))))---)))...........))).))))))..... ( -21.40, z-score = -0.91, R) >dp4.chrXR_group8 7636803 99 + 9212921 -UUUCGUUUUCGUUUACUUAAUAGAUU-GGUUUUCUUUUAGAAUAUCGCUACGAGAGUUGGUUUUAGUAACCAAACACCAAAUGUGUGUGUGUUGUUGUUG---------- -((((((...((.....((((.(((..-.....))).)))).....))..))))))..(((((.....)))))(((((((......)).))))).......---------- ( -16.40, z-score = 0.04, R) >droPer1.super_48 414952 99 + 581423 -UUUCGUUUUCGUUUACUUAAUAGAUU-GGUUUUCUUUUAGAAUAUCGCUACGAGAGUUGGUUUUAGUAACCAAACACCAAAUGUGUGUGUGUUGUUGUUG---------- -((((((...((.....((((.(((..-.....))).)))).....))..))))))..(((((.....)))))(((((((......)).))))).......---------- ( -16.40, z-score = 0.04, R) >droMoj3.scaffold_6680 10540970 80 - 24764193 --------------UUUCAUUUUGUUACUUUGUUCUUUUAGAAUAUCGCUAAAGGAUUUGGCUCUAGUGGCCAAAACUU---GUUUAAUUUUAAUUU-------------- --------------...................((((((((.......))))))))(((((((.....)))))))....---...............-------------- ( -13.70, z-score = -1.34, R) >droGri2.scaffold_15110 23884240 76 + 24565398 -----------------UCGUUUGUU-UGUUGUUCUUUUAGAAUAUCGCUACAGGAAUUGGCUCUAGUGGCCAAAACUU---GUUAUUUGUUCAUUU-------------- -----------------.........-.............(((((.....(((((..((((((.....))))))..)))---))....)))))....-------------- ( -15.80, z-score = -1.74, R) >droVir3.scaffold_13049 13139129 80 + 25233164 -------------UUUGUUUUUUGUU-UGUUGUUCUUUUAGAAUAUCGCUACAGGAGUUGGCUCUAGUGGCCAAAACUU---GUUGUUUAUUAAUAU-------------- -------------.............-.(.(((((.....))))).)((.(((((..((((((.....))))))..)))---)).))..........-------------- ( -16.10, z-score = -1.65, R) >consensus _CCCGACUUUCGUUUAUCUGAUAGUUU_GGUUUUCUUUUAGAAUAUCGCUACAAGAGUUGGUUUUAGUAACCAAAUUUU___UUUGUUUGUUUUCUUGAUG__________ ................................(((((.(((.......))).)))))((((((.....))))))..................................... ( -9.83 = -8.87 + -0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:38:05 2011