| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,557,544 – 19,557,635 |
| Length | 91 |
| Max. P | 0.948592 |
| Location | 19,557,544 – 19,557,635 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 69.34 |
| Shannon entropy | 0.54291 |
| G+C content | 0.45945 |
| Mean single sequence MFE | -25.41 |
| Consensus MFE | -13.56 |
| Energy contribution | -13.56 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.54 |
| SVM RNA-class probability | 0.948592 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19557544 91 - 24543557 -CUCUUACUCCCAUCGCAUUCUCAAUGUUUCGGUUGGUCAAGUGACUGUAACUGGAACGACGGAAGACAUAGUCGCAGUCCAAGACGGUGAC----- -..........((((((........((((((((((((((....))))..))))))))))..(((.(((...)))....)))..).)))))..----- ( -24.10, z-score = -0.25, R) >droYak2.chr3L 3207449 92 + 24197627 -CUCUUACUCCCAUCGCAUUCUCGAUGUUUCGGUUGGUCAAGUGACUGUAACUGGAACGACGGAAGACAUAGUCGCAGUCCAAGACGGUGACG---- -..............(..(((.((.((((((((((((((....))))..)))))))))).)))))..)...(((((.(((...))).))))).---- ( -27.40, z-score = -0.73, R) >droEre2.scaffold_4784 19354993 96 - 25762168 -CUCUUACUCCCAUCGCAUUCUCGAUGUUUCGGUUGGUCAAGUGACUGUAACUGGAACGACGGAAGACAUGGUCGCAGUCCAAGACGGUGACGGCGA -............((((.(((.((.((((((((((((((....))))..)))))))))).)))))......(((((.(((...))).))))).)))) ( -31.50, z-score = -0.73, R) >droAna3.scaffold_13337 5960744 90 + 23293914 CUUCUUUCGCUUUUCGUAUUCUUAAUGUUUCGGUUGGUCAAGUGACUGUAACUGGAACGACAGAAUGCGAAGACGU--CUUUGGGUGGUGGU----- ......((((((((((((((((...((((((((((((((....))))..))))))))))..))))))))))))(..--(....)..))))).----- ( -29.70, z-score = -3.17, R) >droMoj3.scaffold_6680 10536878 74 + 24764193 --UUUUUCG-UCUUCUUAUUCUUAUUGUUUCGGUUGGUCAAGUGACUGUAACUGGAACGACAAGACGAUACGACGC--C------------------ --.....((-((.......((((.(((((((((((((((....))))..))))))))))).))))......)))).--.------------------ ( -21.52, z-score = -2.39, R) >droVir3.scaffold_13049 13136314 74 - 25233164 --UUUUUCG-UCUUCUUAUUCUUAUUGUUUCGGUUGGUCAAGUGACUGUAACUGGAACGACAAGACGAUCCGACGA--C------------------ --....(((-((.......((((.(((((((((((((((....))))..))))))))))).))))......)))))--.------------------ ( -23.62, z-score = -2.73, R) >droGri2.scaffold_15110 23881998 73 - 24565398 ---UUUUCG-UCUUCUUAUUCUUAUUGUUUCGGUUGGUCAAGUGACUGUAACUGGAACGACAACAAGACAGACAGA--C------------------ ---.....(-(((((((.((....(((((((((((((((....))))..))))))))))).)).)))).))))...--.------------------ ( -20.00, z-score = -1.82, R) >consensus __UCUUUCGCUCUUCGUAUUCUUAAUGUUUCGGUUGGUCAAGUGACUGUAACUGGAACGACAGAAGGCAAAGACGC__C____G__GGUG_______ .........................((((((((((((((....))))..))))))))))...................................... (-13.56 = -13.56 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:38:03 2011