| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,553,087 – 19,553,180 |
| Length | 93 |
| Max. P | 0.718058 |
| Location | 19,553,087 – 19,553,180 |
|---|---|
| Length | 93 |
| Sequences | 9 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 78.99 |
| Shannon entropy | 0.41927 |
| G+C content | 0.33677 |
| Mean single sequence MFE | -10.22 |
| Consensus MFE | -6.79 |
| Energy contribution | -7.12 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.718058 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 19553087 93 + 24543557 --CCCGAAAGCGGAAAAUAAAAACGAAACCCAAGCAAUUUGAUCUUUAAAUUUAAGCACGUUUAAAUCAAAAGAGCAAUGGACACAACUACACAU --(((....).))................(((......(((.(((((..(((((((....)))))))..))))).)))))).............. ( -12.40, z-score = -1.62, R) >droSim1.chr3L 18885266 95 + 22553184 CCCCAAAAAGAGGAAAAUAAAAACGAAACCCAAGCAAUUUGAUCUUUAAAUUUAAGCACGUUUAAAUCAAAAGAGCAACGGACACAACUACACAU ..((.......((................)).......(((.(((((..(((((((....)))))))..))))).))).)).............. ( -9.49, z-score = -1.10, R) >droSec1.super_29 256196 95 + 700605 CCCCAAAAAGAGGAAAAUAAAAACGAAACCCAAGCAAUUUGAUCUUUAAAUUUAAGCACGUUUAAAUCAAAAGAGCAACGGACACAACUACACAU ..((.......((................)).......(((.(((((..(((((((....)))))))..))))).))).)).............. ( -9.49, z-score = -1.10, R) >droYak2.chr3L 3203161 91 - 24197627 ----CGAACGCGGAGAAUAAAAACGAAAACCAAGCAAUUUGAUCUUUAAAUUUAAGCACGUUUAAAUCAAAAGAGCAACGGACACAACUACACAU ----((...((......................))...(((.(((((..(((((((....)))))))..))))).)))))............... ( -8.65, z-score = -0.19, R) >droEre2.scaffold_4784 19350505 91 + 25762168 ----CGAAAGCGGAAAAUAAAAACGAAACCCAAGCAAUUUGAUCUUUAAAUUUAAGCACGUUUAAAUCAAAAGAGCAACGGACACAACUACACAU ----((...((((................))..))...(((.(((((..(((((((....)))))))..))))).)))))............... ( -8.69, z-score = -0.40, R) >dp4.chrXR_group8 7629234 87 + 9212921 --------CCAAAAAAGCCCAGACGAAACGAAGGCAAUUUGAUCUUUAAAUUUAAGCACGUUUAAAUCAAAAGAGCAACGGACACAACUACACAU --------((......(((..(......)...)))...(((.(((((..(((((((....)))))))..))))).))).)).............. ( -12.60, z-score = -1.98, R) >droPer1.super_48 407384 87 + 581423 --------CCAAAAAAGCCCAGACGAAACGAAGGCAAUUUGAUCUUUAAAUUUAAGCACGUUUAAAUCAAAAGAGCAACGGACACAACUACACAU --------((......(((..(......)...)))...(((.(((((..(((((((....)))))))..))))).))).)).............. ( -12.60, z-score = -1.98, R) >droVir3.scaffold_13049 13131476 71 + 25233164 -------------------AAAAAAGCCCAAAAGCAAUUUGAUCUUUAAAUUUAAGCACGUUUAAAUCAAAAGAGCU-----CACAAAUACCAAC -------------------......((......)).(((((.(((((..(((((((....)))))))..)))))...-----..)))))...... ( -8.40, z-score = -1.83, R) >droGri2.scaffold_15110 23877346 76 + 24565398 --------------AAAAGCAAAAAGCCCAAAAGCAAUUUGAUCUUUAAAUUUAAGCACGUUUAAAUCAAAAGAGCA-----CACAAAUACUAAC --------------....((.....((......)).......(((((..(((((((....)))))))..))))))).-----............. ( -9.70, z-score = -1.59, R) >consensus ______AAAGAGGAAAAUAAAAACGAAACCCAAGCAAUUUGAUCUUUAAAUUUAAGCACGUUUAAAUCAAAAGAGCAACGGACACAACUACACAU ......................................(((.(((((..(((((((....)))))))..))))).)))................. ( -6.79 = -7.12 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:38:00 2011