| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,532,963 – 19,533,058 |
| Length | 95 |
| Max. P | 0.887935 |
| Location | 19,532,963 – 19,533,058 |
|---|---|
| Length | 95 |
| Sequences | 13 |
| Columns | 123 |
| Reading direction | forward |
| Mean pairwise identity | 71.68 |
| Shannon entropy | 0.53533 |
| G+C content | 0.51673 |
| Mean single sequence MFE | -34.23 |
| Consensus MFE | -13.91 |
| Energy contribution | -13.25 |
| Covariance contribution | -0.65 |
| Combinations/Pair | 2.00 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.887935 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19532963 95 + 24543557 GAUCAGAGCUUCAUACAGCUGUUGUUCGUCCAGCAGCUCUACAAGCGUUUGAGGUGGCAUCAAAUUCUGGUGCAAACCACUCACAUAGUGAAGCA---------------------------- .......(((((((..((((((((......))))))))........((..(.(((.((((((.....))))))..))).)..))...))))))).---------------------------- ( -31.50, z-score = -2.38, R) >anoGam1.chr2R 53444279 120 + 62725911 GAUUUGCGUUUCGUUUACCAAAUCUUCGCCGGUUAGCAGUACCA-CGUACAUGGCGUUG-AAGAAUGUGACACA-CUUUUCCAGAUCUGCAAGUAGAAAAAUCCCCAAUUAGGUCAGUACACA ((((((.((.......))))))))......(((.......))).-.((((.((((...(-((((.((.....))-.)))))....((((....))))...............))))))))... ( -21.50, z-score = 0.76, R) >droGri2.scaffold_15110 23852794 95 + 24565398 GACUAGUGUUUCAUACAGCUGAUGCUCAUCCAGUAGAUCUACCAGCGUCUGAGGCGGCAUCAGAUUCUGGUGCAGUCCAUUGAUGUAGUGCAGGA---------------------------- .....((((...))))..(((.((((((((.(((.(((.((((((.((((((.......)))))).))))))..))).))))))).)))))))..---------------------------- ( -27.70, z-score = 0.20, R) >droMoj3.scaffold_6680 10508038 95 - 24764193 AAUCAGGGCGCCAUACAGCUGCUGCUCGUCCAGCAGAUCCACCAGCGUCUGCGGCGGCAUCAGAUUCUGGUGCAGCCCAUUGAUGUAGUGCAGCA---------------------------- .................(((((.(((((((..((((((.(....).))))))(((.(((((((...))))))).)))....)))).)))))))).---------------------------- ( -37.50, z-score = -1.02, R) >droVir3.scaffold_13049 13108728 95 + 25233164 AAUCAGCGCCACAUAAAGCUGCUGCUCGUCCAGCAGAUCCACCAGCGUCUGUGGCGGCAUCAGAUUCUGAUGCAAUCCAUUGAUGUAGUGCAGCA---------------------------- .....((..(((......((((((......))))))........(((((.((((..(((((((...)))))))...)))).))))).)))..)).---------------------------- ( -34.40, z-score = -1.94, R) >droWil1.scaffold_180727 817847 95 + 2741493 CAAAAGGCCAGAGUAGAGCUGCUGUUCAUCCAGCAGCUCGACCAGUGUCUGGGGCGGCAUUAGAUUCUGAUGCAAGCCAUUUAUAUAGAGAUAGG---------------------------- .......(((((((.(((((((((......))))))))).)).....)))))(((.(((((((...)))))))..))).................---------------------------- ( -35.30, z-score = -2.95, R) >droPer1.super_48 387147 95 + 581423 AAUCAGUGCCGCAUACAGCUGCUGUUCGUCCAGCAGCUCCACCAGAGCCUGCGGCGGCAUAAGGUUCUGGUGCAAUGCGUUCACAUAGUGCAGCA---------------------------- .....(((.(((((..((((((((......)))))))).(((((((((((((....))...)))))))))))..)))))..)))...........---------------------------- ( -40.80, z-score = -2.75, R) >dp4.chrXR_group8 7609048 95 + 9212921 AAUCAGUGCCGCAUACAGCUGCUGUUCGUCCAGCAGCUCCACCAGAGCCUGCGGCGGCAUAAGGUUCUGGUGCAAUGCGUUCACAUAGUGCAGCA---------------------------- .....(((.(((((..((((((((......)))))))).(((((((((((((....))...)))))))))))..)))))..)))...........---------------------------- ( -40.80, z-score = -2.75, R) >droAna3.scaffold_13337 6453323 95 + 23293914 AACUAACGCCCCGUAUAGUUGCUGCUCAUCCAACAGCUCCACCAGAGUCUGCGGUGGCAUCAGGUUCUGAUGCAACCCGUUGAUGUAGUGAAGCA---------------------------- ((((((((...))).)))))((((((((((.(((.((((.....))))..(.(((.(((((((...))))))).))))))))))).)))..))).---------------------------- ( -29.10, z-score = -1.28, R) >droEre2.scaffold_4784 19330491 95 + 25762168 GAUGAGCGCUUCAUAGAGCUGUUGUUCGUCCAGCAGCUCCACAAGCGUUUGUGGUGGCAUCAGAUUCUGGUGCAACCCACUCACAUAGUGAAGCA---------------------------- .......(((((((.(((((((((......))))))))).......((..((((..(((((((...)))))))...))))..))...))))))).---------------------------- ( -40.40, z-score = -3.93, R) >droYak2.chr3L_random 940691 95 + 4797643 GAUGAGAGCUUCGUAGAGCUGCUGUUCGUCCAGGAGCUCCACUAGCGUUUGAGGUGGCAUUAGAUUCUGGUGCAACCCACUCACAUAGUGAAGCA---------------------------- .......(((((...(((((.(((......))).))))).(((((.(..((.(((.(((((((...))))))).)))))..).).))))))))).---------------------------- ( -34.40, z-score = -1.82, R) >droSec1.super_29 235767 95 + 700605 GAUCAGAGCUUCAUACAGCUGCUGUUCGUCCAGCAGCUCCACAAGCGUUUGAGGUGGCAUCAAAUUCUGGUGCAACCCACUCACAUAGUGAAGCA---------------------------- .......(((((((..((((((((......))))))))......(.(..((.(((.((((((.....)))))).)))))..).)...))))))).---------------------------- ( -35.80, z-score = -3.40, R) >droSim1.chr3L 18864432 95 + 22553184 GAUCAGAGCUUCAUACAGCUGCUGUUCGUCCAGCAGCUCCACAAGCGUUUGAGGUGGCAUCAAAUUCUGGUGCAACCCACUCACAUAGUGAAGCA---------------------------- .......(((((((..((((((((......))))))))......(.(..((.(((.((((((.....)))))).)))))..).)...))))))).---------------------------- ( -35.80, z-score = -3.40, R) >consensus GAUCAGAGCUUCAUACAGCUGCUGUUCGUCCAGCAGCUCCACCAGCGUCUGAGGCGGCAUCAGAUUCUGGUGCAACCCAUUCACAUAGUGAAGCA____________________________ .......((.........((((((......))))))................((..((((((.....))))))...))..............))............................. (-13.91 = -13.25 + -0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:37:59 2011