| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,509,389 – 19,509,487 |
| Length | 98 |
| Max. P | 0.791933 |
| Location | 19,509,389 – 19,509,487 |
|---|---|
| Length | 98 |
| Sequences | 7 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 74.46 |
| Shannon entropy | 0.45683 |
| G+C content | 0.57328 |
| Mean single sequence MFE | -34.67 |
| Consensus MFE | -19.71 |
| Energy contribution | -18.66 |
| Covariance contribution | -1.05 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.791933 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19509389 98 + 24543557 CCUCGGGAUGCCUGACCUCAGGCAUUCAGCUCGGUUUUCCACCGACUCCGGCGAUUGCGUUCUGGGCAA---ACAGCCCUCCCAGAUUUAUGGGACCGCAA ..((((((((((((....)))))))))((.(((((.....)))))))....)))(((((....((((..---...))))(((((......))))).))))) ( -41.10, z-score = -3.14, R) >droSim1.chr3L 18839493 98 + 22553184 CCUCGGGAUGCCUGACCUCAGGCAUUCAGCUCGGUUUUCCACCGACUCCGGCGAUUGCGUUCUGGGCAA---ACAGCCCUCCCAGAUUUAUGGGACCGCAA ..((((((((((((....)))))))))((.(((((.....)))))))....)))(((((....((((..---...))))(((((......))))).))))) ( -41.10, z-score = -3.14, R) >droSec1.super_29 212080 98 + 700605 CCUCGGGAUGCCUGACCUCAGGCAUUCAGCUCGGUUUUCCACCGACUCCGGCGAUUGCGUUCUGGACAA---ACAGCCCUCCCAGAUUUAUGGGACCGCAA ..((((((((((((....)))))))))((.(((((.....)))))))....)))(((((..(((.....---.)))...(((((......))))).))))) ( -35.70, z-score = -2.17, R) >droYak2.chr3L 3165032 98 - 24197627 CCUCGGGAUGCCUGACCUCAGGCAUUCAGCUCGGUUUUCCACCGACUCCGGCGAUUGCGUUCUGGGCAA---GCGGCCCUCUCAGAUUUAUGGGACCGCAA .....(((((((((....))))))))).((((((.....(.(((....))).)........))))))..---(((((((............))).)))).. ( -38.42, z-score = -1.63, R) >droEre2.scaffold_4784 19306075 98 + 25762168 CCUCGGGAUGGCUGACCUCAGGCAUUCAGCUCGCUUUUCCACCGACUCCGGCGAUUGCGUUCUGGGCAA---GCAGCCCUCUCAGAUUUAUGGGACCGCAA ..((((((((.(((....))).)))))..............(((....))))))(((((....((((..---...))))(((((......))))).))))) ( -30.80, z-score = 0.28, R) >dp4.chrXR_group8 7586174 93 + 9212921 -------GUUCUCGUCCUGAGGU-CAGAAUCAGCAAUCGUUGCGGUUUUGGGGGGUGGGUCGGGGACAACAAACAAGACUCGCAGAUUUAUGUGACCGCAA -------(((((((.((((...(-(((((((.(((.....)))))))))))....)))).)))))))............(((((......)))))...... ( -27.80, z-score = -0.49, R) >droPer1.super_48 364288 93 + 581423 -------GUUCUCGUCCUGAGGU-CAGAAUCAGCAAUCGUUGCGGUUUUGGGGGGUGGGUCGGGGACAACAAACAAGACUCGCAGAUUUAUGUGACCGCAA -------(((((((.((((...(-(((((((.(((.....)))))))))))....)))).)))))))............(((((......)))))...... ( -27.80, z-score = -0.49, R) >consensus CCUCGGGAUGCCUGACCUCAGGCAUUCAGCUCGGUUUUCCACCGACUCCGGCGAUUGCGUUCUGGGCAA___ACAGCCCUCCCAGAUUUAUGGGACCGCAA .....(((((((((....)))))))))((.(((((.....))))))).(((.......(((...)))............(((((......))))))))... (-19.71 = -18.66 + -1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:37:54 2011