| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,487,627 – 19,487,719 |
| Length | 92 |
| Max. P | 0.543956 |
| Location | 19,487,627 – 19,487,719 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 91.04 |
| Shannon entropy | 0.16598 |
| G+C content | 0.31789 |
| Mean single sequence MFE | -20.83 |
| Consensus MFE | -16.75 |
| Energy contribution | -16.78 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.543956 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 19487627 92 + 24543557 ----GUCCGAGACGGAGAUGGAAAGAAGUGUUAUAAAAUAAUAAAUGCCUUGCAUUUUUGCAAUUGCAUAAACAUAUGCAUGUGUAUAUGUUAAUG-- ----.((((...))))............................((((.(((((....)))))..)))).(((((((((....)))))))))....-- ( -19.90, z-score = -1.43, R) >droAna3.scaffold_13337 5295604 92 - 23293914 ----GGCAGAGACAGAGAUGGAGAAAAGUGUUAUAAAAUAAUAAAUGCCUUGCAUUUUUGCAAUUGCAUAAACAUAUGCAUGUGUAUAUGUUAAUG-- ----.((((...(((((((((((.....((((((...)))))).....))).))))))))...))))...(((((((((....)))))))))....-- ( -21.60, z-score = -1.87, R) >droYak2.chr3L 3145621 94 - 24197627 ----GACGGAGAUAGAGAUGGAGAGAAGUGUUAUAAAAUAAUAAAUGCCUUGCAUUUUUGCAAUUGCAUAAACAUAUGCAUGUGUAUAUGUUAAUGCA ----......(.(((((((((((.(...((((((...))))))....)))).)))))))))...(((((.(((((((((....))))))))).))))) ( -22.60, z-score = -2.17, R) >droSec1.super_29 191891 92 + 700605 ----GUCCGAGACGGAGAUGGAAAGAAGUGUUAUAAAAUAAUAAAUGCCUUGCAUUUUUGCAAUUGCAUAAACAUAUGCAUGUGUAUAUGUUAAUG-- ----.((((...))))............................((((.(((((....)))))..)))).(((((((((....)))))))))....-- ( -19.90, z-score = -1.43, R) >droSim1.chr3L 18819885 92 + 22553184 ----GUCCGAGACGGAGAUGGAAAGAAGUGUUAUAAAAUAAUAAAUGCCUUGCAUUUUUGCAAUUGCAUAAACAUAUGCAUGUGUAUAUGUUAAUG-- ----.((((...))))............................((((.(((((....)))))..)))).(((((((((....)))))))))....-- ( -19.90, z-score = -1.43, R) >droGri2.scaffold_15110 23796044 95 + 24565398 GAGUGAGAAAGACAGAGAUGGA---AAAUGUUAUAAAAUAAUAAAUGUCUUGCAAUUUGGCAAUUGCAUAAACAUAUGCAUGUGUAUAUGUUAAUGCA ..((.(((((((((...((...---...............))...))))))....))).))...(((((.(((((((((....))))))))).))))) ( -21.07, z-score = -1.75, R) >consensus ____GUCCGAGACAGAGAUGGAAAGAAGUGUUAUAAAAUAAUAAAUGCCUUGCAUUUUUGCAAUUGCAUAAACAUAUGCAUGUGUAUAUGUUAAUG__ ..........(.((((((((.((.....((((((...))))))......)).))))))))).....(((.(((((((((....))))))))).))).. (-16.75 = -16.78 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:37:53 2011